NC7: Conservation, Management, Enhancement and Utilization of Plant Genetic Resources

(Multistate Research Project)

Status: Active

SAES-422 Reports

09/25/2023

Illinois


Banerjee S, Singh R, Eilts K, Sacks EJ, Singh V. 2022. Valorization of Miscanthus x giganteus for sustainable recovery of anthocyanins and enhanced production of sugars. Journal of Cleaner Production. 369:133508. https://doi.org/10.1016/j.clepro.2022.133508


Njuguna JN, Clark LV, Anzoua KG, Bagmet L, Chebukin P, Dwiyanti MS, Dzyukenko E, Dzyubenko N, Ghimire BK, Jin X, Johnson DA, Jorgensen U, Kjeldsen JB, Nagano H, Peng J, Petersen KK, Sabitov A, Seong ES, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, Sacks EJ. 2023. Biomass yield in a genetically diverse Miscanthus sacchariflorus germplasm panel phenotyped at five locations in Asia, North America, and Europe. GCB Bioenergy. 00:1-21. https://doi.org/10.1111/gcbb.13043


Palma-Salgado S, Ku KM, Juvick JA, Nguyen TH, Feng H. 2023. Artificial phylloplanes resembling physicochemical characteristics of selected fresh produce and their potential use in bacterial attachment/removal studies. Food Control. 149:109730. https://doi.org/10.1016/j.foodcont.2023.109730


Paulsmeyer MN, Juvik JA. 2023. Increasing aleurone layer number and pericarp yield for elevated nutrient content in maize. G3 Journal. 13:jkad085. https://doi.org/10/1093/g3journal/jkad085


Paulsmeyer MN, Juvik JA. 2023. R3-MYB repressor Mybr97 is a candidate gene associated with the Anthocyanin3 locus and enhanced anthocyanin accumulation in maize. Theor Appl Genet. 136:55. https://doi.org/10.1007/s00122-023-04275-4


Sakhale SA, Yadav S, Clark LV, Lipka AE, Kumar A, Sacks EJ. 2023. Genome-wide association analysis for emergence of deeply sown rice (Oryza sativa) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field. Front. in Plant Sci. 12:1172816. https://doi.org/10.3389/fpls.2023.1172816


Trieu A, Belaffif MB, Hirannaiah P, Manjunatha S, Wood R, Bathula Y, Billingsley RL, Arpan A, Sacks EJ, Clemente TE, Moose SP, Reichert NA, Swaminathan K. 2022. Transformation and gene editing in the bioenergy grass Miscanthus. Biotechnol Biofuels. 15:148. https://doi.org/10.1186/s13068-022-02241-8


Varela S, Zheng X, Njuguna JN, Sacks EJ, Allen DP, Ruhter J, Leakey ADB. 2022. Deep convolutional neural networks exploit high-spatial-and temporal-resolution aerial imagery to phenotype key traits in Miscanthus. Remote Sensing. 14:5333. https://doi.org/10.3390/rs14215333


Zhang S, Huang G, Zhang Y, Lv X, Wan K, Liang J, Feng Y, Dao J, Wu S, Zhang L, Yang X, Lian X, Huang L, Shao L, Zhang J, Qin S, Tao D, Crews TE, Sacks EJ, Wade LJ, Hu F. 2022. Sustained productivity and agronomic potential of perennial rice. Nature Sustainability. 6:28-38. https://doi.org/10.1038/s41893-002-00997-3


Indiana


Bessho-Uehara K, Masuda K, Wang DR, Angeles-Shim RB, Obara K, Nagai K, Murase R, Aoki S, Furuta T, Miura K, Wu J, Yamagata Y, Yasui H, Kantar MB, Yoshimura A, Kamura T, McCouch SR, Ashikiri. 2023. Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication. PNAS. 120:e2207105120. https://doi.org/10.1073/pnas.2207105120


Diatta-Holgate E, Hugghis E, Weil C, Faye JM, Danquah A, Diatta C, Tongoona P, Danquah EY, Cisse N, Tuinstra MR. 2022. Natural variability for protein digestibility and grain quality traits in a West African Sorghum Association Panel. Journal Cereal Sci. p.103504. https://doi.org/10.1016/j.jcs.2022.103504


Lin M, Lynch V, Ma D, Maki H, Jin J, Tuinstra MR. 2022. Multi-species prediction of physiological traits with hyperspectral modeling. Plants. 11:676. https://doi.org/10.3390/plants11050676.


Marghoob MU, Rodriquez-Sanchez A, Imran A, Mubeen F, Hoagland L. 2022. Diversity and functional traits of indigenous soil microbial flora associated with salinity and heavy metal concentrations in agricultural fields within the Indus Basin region, Pakistan. Front. in Microbiol. 13:1020175. https://doi.org/10.3389/fmicb.2022.1020175


Nepal N, Condori-Apfata JA, Gaire R, Anco ME, Scofield S, Zhang C, Mohammadi M. 2023. Phenotypic and genotypic resources for the USDA quinoa (Chenopodium quinoa) genebank accessions. Crop Sci. 63(5):2685-2698. https://doi.org/10.1002/csc2.21037


Pathak H, Buckmaster D, Messina C, Wang D. 2023. Crop growth model: Optimal application of nitrogen fertilizer in corn for economic returns and environmental sustainability. ASABE Annual Meetings. 2300421. https://doi.org/10.13031/aim.202300421


Rizi MS, Mohammadi M. 2023. Breeding crops for enhanced roots to mitigate against climate change without compromising yield. Rhizosphere. 26:100702. https://doi.org/10.1016/j.rhisph.2023.100702


Simons J, Herbert T, Kauffman C, Batete M, Simpson A, Katsuki Y, Le D, Amundson D, Buescher E, Weil C, Tuinstra MR, Addo-Quaye C. 2022. Systematic prediction of EMS-induced mutations in a sorghum mutant population. Plant Direct. 6(5):e404. https://doi.org/10.1002/pld3.404


Souza A, Rojas MZ, Yang Y, Lee L, Hoagland L. 2022. Classifying cadmium contaminated leafy vegetables using hyperspectral imaging and machine learning. Heliyon. 8:e12256. https://doi.org/10.1016/j.heliyon.2022.e12256


Ting T, Souza A, Imel R, Guadagno CR, Hoagland C, Yang Y, Wang DR. 2023. Quantifying physiological trait variation with automated hyperspectral imaging in rice. Front. in Plant Sci. 21:August 2023. https://doi.org/10.3389/fpls


Tolley SA, Brito LF, Wang DR, Tuinstra MR. 2023. Genomic prediction and association mapping of maize grain yield in multi-environment trials based on reaction norm models. Frontiers in Genetics. 14:1221751. https://doi.org/10.3389/fgene.2023.1221751


Trivino NJ, Rodriquez-Sanchez A, Filley T, Camberato JJ, Colley M, Simon P, Hoagland L. 2023. Carrot genotypes differentially alter soil bacterial communities and decomposition of plant residue in soil. Plant and Soil. 486:587-606. https://doi.org/10.1007/s11104-023-05892-0


Wang T, Crawford MM, Tuinstra MR. 2023. A novel transfer learning framework for sorghum biomass prediction using UAV-based remote sensing data and genetic markers. Front. in Plant Sci. 14. https://doi.org/10.3389/fpls.2023.1138479


Zaidi PH, Vinayan MT, Nair SK, Kuchanur PH, Kumar R, Singh SB, Tripathi MP, Patil P, Ahmed S, Hussain A, Kulkarni AP, Wangmo P, Tuinstra MR, Prasanna BM. 2023. Heat-tolerant maize for rainfed hot, dry environments in the lowland tropics: From breeding to improved seed delivery. The Crop Journal. 11(4):986-1000. https://doi.org/10.1016/j.cj.2023.06.008


Iowa


Aboobucker SI, Zhou L, Lübberstedt T. 2023. Haploid male fertility by parallel spindle genes in Arabidopsis thaliana. Nature Plants. 9:214-218. https://doi.org/10.1038/s41477-022-01332-6


Cook TM, Isenegger D, Dutta S, Sahab S, Kay P, Aboobucker SI, Biswas E, Heerschap S, Nikolau BJ, Dong L, Lübberstedt T. 2023. Overcoming roadblocks for in vitro nurseries in plants: induction of meiosis. Front. in Plant Sci. 14:1204813. https://doi.org/10.3389/fpls.2023.1204813


Dermail A, Lübberstedt T, Suwarno WB, Chankaew S, Lertrat K, Ruanjaichon V, Suriharn K. 2023. Combining ability of tropical x temperate maize inducers for haploid induction rate, R1-nj seed set, and agronomic traits. Front. in Plant Sci. 14:1154905. https://doi.org/10.3389/fpls.2023.1154905


Dong D, Nagasubramanian K, Wang R, Frei UK, Jubery TZ, Lübberstedt T, Ganapathysubramanian B. 2023. Self-supervised maize kernel classification and segmentation for embryo identification. Front. in Plant Sci. 14:1108355. https://doi.org/10.3389/fpls.2023.1108355


Dos Santos CL, Miguez FE, King KA, Ruiz A, Sciarresi C, Baum ME, Danalatos GJN, Stallman M, Wiley E, Pico LO, Thies A, Puntel LA, Topp CN, Trifunovic S, Eudy D, Mensah C, Edwards JW, Schnable PS, Lamkey KR, Vyn TJ, Archontoulis SV. 2023. Accelerated leaf appearance and flowering in maize after four decades of commercial breeding. Crop Sci. https://doi.org/10.1002/csc2.21044


Guo X, Qiu Y, Nettleton D, Schnable PS. 2023. High-throughput field plant phenotyping: A self-supervised sequential CNN method to segment overlapping plants. Plant Phenomics. 5:0052. https://doi.org/10.34133/plantphenomics.0052


Hintch TD, Lauter AM, Kinney SM, Lübberstedt T, Frei U, Duangpageng P, Edwards JW, Scott MP. 2023. Development of maize inbred lines with elevated grain methionine concentration from a high methionine population. Crop Sci. 63:2417-2425. https://doi.org/10.1002/csc2.20983


Hou F, Zhang N, Ma L, An L, Zhou X, Zou C, Yang C, Pan G, Lübberstedt T, Shen Y. 2023. ZmbZIP54 and ZmFDX5 cooperatively regulate maize seedling tolerance to lead by mediating ZMPRP1 transcription. Int. Journal of Biological Macromolecules. 224:621-633. https://doi.org/10.1016/j.ijbiomac.2022.10.151


Kusmec A, Attigala L, Dai X, Srinivansan S, Yeh CT, Schnable PS. 2023. A genetic tradeoff for tolerance to moderate and severe heat stress in US hybrid maize. PLOS Genetics. 19:e1010799. https://doi.org/10.1371/journal.pgen.1010799


Ledesma A, Aguilar FS, Uberti A, Hufford M, Edwards J, Hearne S, Lübberstedt T. 2023. Haplotype sharing and diversity analyses of DH Lines derived from different cycles of the Iowa Stiff Stalk Synthetic Maize Population. Front. in Plant Sci. 14:1226072. https://doi.org/10.3389/fpls.2023.1226072


Liang T, Hu Y, Xi N, Zhang M, Zou C, Ge F, Yuan G, Gao S, Zhang S, Pan G, Ma L, Lübberstedt T, Shen Y. 2023. GWAS across multiple environments and WGCNA suggest the involvement of ZmARF23 in embryonic callus induction from immature maize embryos. Theor Appl Genet. 136:93. https://doi.org/10.1007/s00122-023-04314-x


Liao CY, Pu Y, Nolan TM, Montes C, Guo H, Walley JW, Yin Y, Bassham DC. 2023. Brassinosteroids modulate autophagy through phosphorylation of RAPTOR1B by the GSK3-like kinase BIN2 in Arabidopsis. Autophagy. 19:1293-1310. https://doi,org/10.1080/15548627.2022.2124501


McMillen MS, Mahama AA, Sibiya J, Lübberstedt T, Suza WP. 2022. Improving drought tolerance in maize: Tools and techniques. Frontiers in Genetics. 13:1001001. https://doi.org/10.3389/fgene.2022.1001001


Ni Z, Moeinizade S, Kusmec A, Hu G, Wang L, Schnable PS. 2023. New insights into trait introgression with the look-ahead intercrossing strategy. G3 Journal. 13:jkad042. https://doi.org/10.1093/g3journal/jkad042


Peng L, Lang-lang M, Si-yi J, Yao H, Guang-sheng Y, Fei G, Zhong C, Chao-ying Z, Guang-tang P, Lübberstedt T, Ya-ou S. 2023. Population genomic analysis reveals key genetic variations and driving force for embryonic callus induction capability in maize. Journal of Integrative Agriculture. https://doi.org/10.1016/j.jia.2023.06.032


Rohner M, Manzanares C, Yates S, Thorogood D, Copetti D, Lübberstedt T, Asp T, Studer B. 2022. Fine-mapping and comparative genomic analysis reveal the gene composition at the S and Z self-incompatibility loci in grasses. Mol. Biol. and Evol. 40:259. https://doi.org/10.1093/molbev/msac259


Ruiz A, Trifunovic S, Eudy DM, Sciarresi CS, Baum M, Danalatos GJN, Elli EF Kalogeropoulos G, King K, Santos CD, Thies A, Pico LO, Catellano MJ, Schnable PS, Topp C, Graham M, Lamkey KR, Vyn TJ, Archontoulis SV. 2023. Harvest index has increased over the last 50 years of maize breeding. Field Crops Res. 300:108991. https://doi.org/10.1016.j.fcr.2023.108991


Sintanaparadee P, Dermail A, Lübberstedt T, Lertrat K, Chankaew S, Ruanjaichon V, Phakamas N, Suriharn K. 2022. Seasonal variation of tropical savanna altered agronomic adaptation of Stock-6-derived inducer lines. Plants. 11:2902. https://doi.org/10.3390/plants11212902


Trentin HU, Yavuz R, Dermail A, Frei UK, Dutta S, Lübberstedt T. 2023. A comparison between inbred and hybrid maize haploid inducers. Plants. 12:1095. https://doi.org/10.3390/plants12051095


Wang J, Li D, Peng Y, Cai M, Liang Z, Yuan Z, Du X, Wang J, Schnable PS, Gu R, Li L. 2022. The anthocyanin accumulation related ZmBZ1, facilitates seedling salinity stress tolerance via ROS scavenging. J. Mol. Sci. 23:16123. https://doi.org/10.3390/ijms232416123


Kansas


Ayalew H, Schapaugh W, Vuong T, Nguyen HT. 2022. Genome-wide association analysis identified consistent QTL for seed yield in a soybean diversity panel tested across multiple environments. Plant Genome. 15:e20268. https://doi/org/10.1002/tpg2.20268


Bian R, Liu N, Xu Y, Su Z, Chai L, Bernardo A, St. Amand P, Fritz A, Zhang G, Rupp J, Akhunov E, Jordan KW, Bai G. 2023. Quantitative trait loci for rolled leaf in a wheat EMS mutant from Jagger. Theor and Appl Genet. https://doi.org/10.1007/s00122-023-04284-3


Cruppe G, Lemes da Silva C, Lollato RP, Fritz AK, Kuhnem P, D Cruz C, Calderon L, Valent B. 2023. QTL pyramiding provides marginal improvement in 2NvS-based wheat blast resistance. Plant Dis. 107(8):2407-2416.  https://doi.org/10.1094/PDIS-09-22-2030-RE


He F, Wang W, Rutter WB, Jordan KW, Ren J, Taagen E, DeWitt N, Sehgal D, Sukumaran S, Dreisigacker S, Reynolds M, Halder J, Sehgal SK, Liu S, Chen J, Fritz A, Cook J, Brown-Guedira G, Pumphrey M, Carter A, Sorrells M, Dubcovsky J, Hayden MJ, Akhunova A, Morrell PL, Szabo L, Rouse M, Akhunov E. 2022. Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat. Nature Communications. 13(1):826. https://doi.org/10.1038/s41467-022-28453-y


Nkurikiye E, Chen G, Tilley M, Wu X, Zhang G, Fritz A, Li Y. 2023. Incorporating chickpea flour can enhance mixing tolerance and dough strength of wheat flour. Cereal Chem. https://doi.org/10.1002/cche.10705


Secchi MA, Correndo AA, Stamm MJ, Durrett T, Prasad PVV, Messina CD, Ciampitti IA. 2022. Suitability of different environments for winter canola oil production in the United States of America. Field Crops Res. 27:108658. https://doi.org/10.1016/j.fcr.2022.108658


Secchi MA, Fernandez JA, Stamm MJ, Durrett T, Prasad PVV, Messina CD, Ciampitti IA. 2023. Effects of heat and drought on canola (Brassica napus L.) yield, oil, and protein: A meta-analysis. Field Crops Res. 293:108848. https://doi.org/10.1016/j.fcr.2023.108848


Shrestha S, Koo D-H, Evers B, Wu S, Walkowiak S, Hucl P, Pozniak C, Fritz A, Poland J. 2023. Wheat doubled haploids have a marked prevalence of chromosomal aberrations. Plant Genome. 16(2):e20309. https://doi.org/10.1002/tpg2.20309


Michigan


Amongi W, Nkalubo ST, Ochwo-Ssemakula M, Badji A, Dramadri IO, Odongo TL, Nuwamanya E, Tukamuhadwe P, Izquierdo P, Cichy K, Kelly J, Mukankusi C. 2023. Genetic clustering, and diversity of African panel of released common bean genotypes and breeding lines. Genet Resources and Crop Evol. 70:2063-2076. https://doi.org/10.1007/s10722-023-01559-y


Amongi W, Nkalubo ST, Ochwo-Ssemakula M, Badji A, Dramadri IO, Odongo TL, Nuwamanya E, Tukamuhabwe P, Izquierdo P, Cichy K, Kelly J, Mukankusi C. 2023. Phenotype based clustering, and diversity of common bean genotypes in seed iron concentration and cooking time. PLOS One. 0284976. https://doi.org/10.1371/journal.pone.0284976


Behling WL, Douches DS. 2023. The effect of self-compatibility factors on interspecific compatibility in Solanum section Petota. Plants. 12:1709. https://doi.org/10.3390/plants12081709


Bird KA, Pires JC, VanBuren R, Xiong Z, Edger PP. 2023. Dosage-sensitivity shapes how genes transcriptionally respond to allopolyploidy and homoeologous exchange in resynthesized Brassica napus. Genetics. 225(1):iyad114. https://doi.org /10.1093/genetics/iyad114


Chen H, Baetsen-Young A, Thompson A, Day B, Lovis W, Wrobel G. 2023. Archaeological Bolivian maize genomes suggest diversity is associated with Inca cultural expansion and environmental variation in South America. Research Square. https://doi.org/10.21203/rs.3.rs-2592230/v1


Chen QXC, Warner RM. 2022. Identification of QTL for Plant Architecture and Flowering Performance Traits in a Multi-Environment Evaluation of a Petunia axillaris x P. exserta Recombinant Inbred Line Population. Horticulturae. 8:1006. https://doi.org/10.3390/horticulturae8111006


Goeckeritz CZ, Gottschalk C, van Nocker S, Hollender CA. 2023. Malus Species with Diverse Bloom Times Exhibit Variable Rates of Floral Development. Journal of the American Society for Hort. Sci. 148:64-73. https://doi.org /10.21273/JASHS05236-22


Goeckeritz CZ, Rhoades KE, Childs KL, Iezzoni AF, VanBuren R, Hollender CA. 2023. Genome of tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes. Hort. Res. 10:uhad097. https://doi.org /10.1093/hr/uhad097


Grumet R, Lin YC, Rett-Cadman S, Malik A. 2022. Morphological and genetic diversity of cucumber (Cucumis sativus L.) fruit development. Plants. 12:0023. https://doi.org/10.3390/plants12010023


Hernandez CO, Labate J, Reitsma K, Fabrizio J, Bao K, Fei Z, Grumet R, Mazourek M. 2023. Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections. Front. in Plant Sci. 14:1130814. https://doi.org/10.3389/fpls.2023.1130814


Hooper SD, Bassett A, Wiesinger JA, Glahn RP, Cichy KA. 2023. Extrusion and drying temperatures enhance sensory profile and iron bioavailability of dry bean pasta. Food Chem. Advances. 3:100422. https://doi.org/10.1016/j.focha.2023.100422


Izquierdo P, Kelly JD, Beebe SE, Cichy K. 2023. Combination of meta-analysis of QTL and GWAS to uncover the genetic architecture of seed yield and seed yield components in common bean. The Plant Genome. 16:e20328. https://doi.org/10.1002/tpg2.20328


Jayakody TB, Hamilton JP, Jensen J, Sikora S, Wood JC, Douches DS, Buell CR. 2023. Genome Report: Genome sequence of 1S1, a transformable and highly regenerable diploid potato for use as a model for gene editing and genetic engineering. G3 Journal. 13:jkad036. https://doi.org/10.1093/g3journal/jkad036


Jeffery HR, Mudukuti N, Buell CR, Childs KL, Cichy K. 2023. Gene expression profiling of soaked dry beans (Phaseolus vulgaris L.) reveals cell wall modification plans a role in cooking time. The Plant Genome. e20364. https://doi.org/10.1002/tpg2.20364


Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissing TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. 2023. Yield prediction through integration of genetic, environmental, and management data through deep learning. G3 Journal. 13:jkad006. https://doi.org/10.1093/g3journal/jkad006


Lee S, Enciso-Rodriguez FE, Behling W, Jayakody T, Panicucci K, Zarka D, Nadakuduti SS, Buell CR, Manrique-Carpintero NC, Douches DS. 2023. HT-B and S-RNase CRISPR-Cas9 double knockouts show enhanced self-fertility in diploid Solanum tuberosum. Front. in Plant Sci. 14:1151347. https://doi.org/10.3389/fpls.2023.1151347


Lima DC, Castro Aveles A, Alpers RT, McFarland BA, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch CN, Hood E, Hooker DC, Knoll JE, Kolkman JM, Liu S, McKay J, Minyo R, Moreta DE, Murray SC, Nelson R, Schnable JC, Sekhon RS, Singh MP, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Wldekidan T, Wisser RJ, Xu W, de Leon N. 2023. 2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. BMC Genomic Data. 24:29. https://doi.org/10.1186/s12863-023-01129-2


Lima DC, Washburn JD, Verela JI, Chen Q, Gage JL, Romay MC, Holland J, Ertl D, Lopez-Cruz M, Aguate FM, de los Campos G, Kaeppler S, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Ortez OA, Schnable JC, Sekhon RS, Singh MP, Sparks EE, Thompson A, Tuinstra M, Wallace J, Weldekidan T, Xu W, de Leon N. 2023. Genomes to Fields 2022 maize genotype by environment prediction competition. BMC Research Notes. 16:148. https://doi.org/10.1186/s13104-023-06421-z


Lin F, Li W, McCoy AG, Wang K, Jacobs J, Zhang N, Huo X, Wani SH, Gu C, Chilvers MI, Wang D. 2022. Identification and characterization of pleiotropic and epistatic QDRL conferring partial resistance to Pythium irregulare and P. sylvaticum in soybean. Theor Appl Genet. 135:3571-3582. https://doi-org/10.1007/s00122-022-04201-0


Lopez SR, Wiersma AT, Strauss NM, Watkins T, Baik BK, Zhang GR, Sehgal SK, Kolb FL, Poland JA, Mason RE, Carter AH, Olson EL. 2023. Description of U6719-004 wheat germplasm with YrAS2388R stripe rust resistance introgression from Aegilops tauschii. J Plant Reg. 17:26-33. https://doi.org/10.1002/plr2320226


Pardo J, Wai CM, Harman M, Nguyen A, Kremling KA, Romay MC, Lepak N, Bauerle TL, Buckler ES, Thompson AM, VanBuren R. 2023. Cross-species predictive modeling reveals conserved drought responses between maize and sorghum. PNAS. 120:e2216894120. https://doi.org/10.1073/pnas.2216894120


St. Aubin S, Wai CM, Raju SKK, Niederhuth CE, VanBuren R. 2022. Regulatory dynamics distinguishing desiccation tolerance strategies within resurrection grasses. Plant Direct. 6:e457. https://doi.org /10.1002/pld3.457


VanBuren R, Wai CM, Giarola V, Zupunski M, Pardo J, Kalinowski M, Grossmann G, Bartels D. 2022. Core cellular and tissue-specific mechanisms enable desiccation tolerance in Craterostigma. Plant Journal. 114:231-245. https://doi.org/10.1111/tpj.16165


Warner RM, Abeli PJ, Beaudry RM. 2023. Development of synthetic cultivars to improve production of desired steviol glycosides in stevia. Acta Horticulturae. 1362:629-633. https://doi.org/10.17660/ActaHortic.2023.1362.85


Yu J, Wu S, Sun H, Wang X, Tang X, Guo S, Zhang Z, Huang S, Xu Y, Weng Y, Mazourek M, McGregor C, Renner SS, Branham S, Kousik C, Wechter WP, Levi A, Grumet R, Zheng Y, Fei Z. 2023. CuGenDBv2: an updated database for cucurbit geonomics. Nucleic Acids Research. 51:1457-D1464. https://doi.org/10.1093/nar/gkac921


Minnesota


Bandillo NB, Jarquin D, Posadas LG, Lorenz AJ, Grael GL. 2022. Genomic selection performs as effectively as phenotypic selection for increasing seed yield in soybean. The Plant Genome. 16:e20285. https://doi.org/10.1002/tpg2.20285


Gilbert E, Merry R, Campbell BW, Stupar RM, Lorenz AJ. 2023. A genome-wide analysis of the USDA Soybean Isoline Collection. The Plant Genome. 16:e20310. https://doi.org/10.1002/tpg2.20310


Menger JP, Bhusal SJ, Kock RL, Lorenz AJ. 2022. Evaluation of advanced soybean breeding lines for resistance to the soybean aphid, 2022. Arthropod Management Tests. 47:137. https://doi.org/10.1093/amt/tsac137


Virdi KS, Sreekanta S, Dobbels A, Haaning A, Jarquin D, Stupar RM, Lorenz AJ, Muehlbauer GJ. 2023. Branch angle and leaflet shape are associated with canopy coverage in soybean. The Plant Genome. 16:e20304. https://doi.org/10.1002/tpg2.20304


Missouri


Baxter I, Ainsworth EA, Brooks MD, Castano-Duque LM, Londo JP, Washburn JD, McElrone AJ, Coyne CJ, et al. 2023. Inclusive collaboration across plant physiology and genomics: now is the time! Plant Direct. 7(5):e493. https://doi.org/10.1002/pld3.493


Boateng ID, Kuehnel L, Daubert CR, Agliata J, Zhang W, Kumar R, Flint-Garcia S, Azlin M, Somavat P, Wan C. 2023. Updating the status quo on the extraction of bioactive compounds in agro-products using a two-pot multivariate design. A comprehensive review. Royal Soc. of Chem. 14:569-601. https://doi.org/10.1039/D2FO00250E


Boateng ID, Kumar R, Daubert CR, Flint-Garcia S, Mustapha A, Kuehnel L, Agliata J, Li Q, Wan C, Somavat P. 2023. Sonoprocessing improves phenolics profile, antioxidant capacity, structure, and product qualities of purple corn pericarp extract. Ultrasonics Sonochemistry. 92:e106418. https://doi.org/10.1016/j.ultsonch.2023.106418


Boateng ID, Mustapha A, Daubert CR, Kuehnel L, Kumar R, Flint-Garcia S, Agliata J, Wan C, Somavat P. 2023. Novel two-pot microwave extraction of purple corn pericarp’s phenolics and evaluation of the polyphenol-rich extract’s product quality, bioactivities, and structural properties. Food and Bioprocess Tech. https://doi.org/10.1007/s11947-023-03072-7


Boateng ID, Mustapha A, Kuehnel L, Daubert CR, Kumar R, Agliata J, Flint-Garcia S, Wan C, Somavat P. 2023. From purple corn waste (pericarp) to polyphenol-rich extract with higher bioactive contents and superior product qualities using two-step optimization techniques. Industrial Crops and Products. 200:116871. https://doi.org/10.1016/j.indcrop.2023.116871


Braun D, Washburn JD, Wood JD. 2023. Enhancing the resilience of plant systems to climate change. Journal of Exp. Bot. 74(9):2787-2789. https://doi.org/10.1093/jxb/erad090


Chan YO, Dietz N, Zeng S, Wang J, Flint-Garcia S, Salazar-Vidal MN, Skrabisova M, Joshi T. 2023. The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis. BMC Genomics. 24:107. https://doi.org/10.1186/s12864-023-09161-3


Choquette NE, Holland JB, Weldekidan T, Drouault J, de Leon N, Flint-Garcia S, Lauter N, Murray SC, Xu W, Wisser RJ. 2023. Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize. New Phytologist. 238:737-749. https://doi.org/10.1111/nph.18769


Flint-Garcia S, Feldmann MJ, Dempewolf H, Morrell PL, Ross-Ibarra J. 2023. Diamonds in the not-so-rough: Wild relative diversity hidden in crop genomes. PLOS Biology. 3002235. https://doi.org/10.1371/journal.pbio.3002235


Guan JC, Li C, Flint-Garcia S, Suzuki M, Wu S, Saunders JW, Dong L, Bouwmeester HJ, McCarty DR, Kock KE. 2023. Maize domestication phenotypes reveal strigolactone networks coordinating grain size evolution with kernel-bearing cupule architecture. The Plant Cell. 35:1013-1037. https://doi.org/10.1093/plcell/koac370


Hu H, Crow T, Nojoomi S, Schulz AJ, Estevez-Palmas JM, Hufford MB, Flint-Garcia S, Sawers, R, Rellan-Alvarez R, Ross-Ibarra J, Runcie DE. 2022. Allel-specific expression reveals multiple paths to highland adaptation in maize. Mol Biol and Evol. 39:239. https://doi.org/10.1093/molbev/msac239


Keigler JI, Wiesinger JA, Flint-Garcia SA, Glahn RP. 2023. Iron bioavailability of maize (Zea mays L.) after removing the germ fraction. Front. in Plant Sci. 14:1114760. https://doi.org/10.3389/fpls.2023.1114760


Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissinger TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. 2023. Yield prediction through integration of genetic, environmental, and management data through deep learning. G3 Journal. 13:jkad006. https://doi.org/10.1093/g3journal/jkad006


Lima DC, Castro Aveles A, Alpers RT, McFarland BA, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch CN, Hood E, Hooker DC, Knoll JE, Kolkman JM, Liu S, McKay J, Minyo R, Moreta DE, Murray SC, Nelson R, Schnable JC, Sekhon RS, Singh MP, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Wldekidan T, Wisser RJ, Xu W, de Leon N. 2023. 2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. BMC Genomic Data. 24:29. https://doi.org/10.1186/s12863-023-01129-2


Lima DC, Washburn JD, Verela JI, Chen Q, Gage JL, Romay MC, Holland J, Ertl D, Lopez-Cruz M, Aguate FM, de los Campos G, Kaeppler S, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Ortez OA, Schnable JC, Sekhon RS, Singh MP, Sparks EE, Thompson A, Tuinstra M, Wallace J, Weldekidan T, Xu W, de Leon N. 2023. Genomes to Fields 2022 maize genotype by environment prediction competition. BMC Research Notes. 16:148. https://doi.org/10.1186/s13104-023-06421-z


Ruppel M, Nelson S, Sidberry G, Mitchell M, Kick DR, Thomas S, Guill K, Oliver M, Washburn JD. 2023. RootBot: high-throughput root stress phenotyping robot. Appl in Plant Sci. 11(6):e11541. https://doi.org/10.1002/aps3.11541


Nebraska


Baenziger PS, Frels KA, Boehm Jr J, Rose DJ, Xu L, Finnie SM, Wegulo SN, Regassa T, Easterly AC, Creech CF, Santra DK, Klein RN, Kolmer JJ, Chen MS, Bowden RL, Guttieri MJ, Bai G, El-Basyoni Salah I, Masterson SD, Poland J. 2022. Registration of “NW13493” hard white wheat. J Plant Reg. 17:136-145. https://doi.org/10.1002/plr2.20270


Baenziger PS, Frels K, Greenspan S, Jones J, Lovegrove A, Rose D, Shewry P, Wallace R. 2022. A stealth health approach to dietary fibre. Nature Food. 4:5-6. https://doi.org/10.1038/s43016-022-00674-w


Baenziger PS, Masterson SD, Boehm Jr JD, Belamkar V, Barnett MD, Rose DJ, Xu L, Wegulo SN, Tegassa T, Easterly AC, Creech CF, Santra DK, Kruger GR, Hergert GW, Klein RN, Jin Y, Kolmer J, Chen MS, Hein GL, Bowden RL, Guttieri MJ, Bai G, El-Basyoni Salah I, Poland J. 2023. Registration of LCS ‘Valiant’ hard red winter wheat. J Plant Reg. 17:125-135. https://doi.org/10.1002/plr2.20256


Bandillo NB, Jarquin D, Posadas LG, Lorenz AJ, Grael GL. 2022. Genomic selection performs as effectively as phenotypic selection for increasing seed yield in soybean. The Plant Genome. 16:e20285. https://doi.org/10.1002/tpg2.20285


Chen J, Wang Z, Tan K, Huang W, Shi J, Li T, Hu J, Wang K, Wang C, Xin B, Zhao H, Song W, Hufford MB, Schnable JC, Jin W, Lai J. 2023. A complete telomere-to-telomere assembly of the maize genome. Nature Genetics. 55:1221-1231. https://doi.org/10.1038/s41588-023-01419-6


Cubins JA, Wells S, Gesch RW, Johnson GA, Walla MK, Chopra R, Marks MD, Swenson RD, Frels K. 2023. Harvest aids did not advance maturity of non-shatter pennycress. Crop Sci. 63:2465-2474. https://doi.org/10.1002/csc2.20979


Diers BW, Specht JE, Graef GL, Song Q, Rainey KM, Ramasubramanian V, Liu X, Myers CL, Stupar RM, An YQC, Beavis WD. 2023. Genetic architecture of protein and oil content in soybean seed and meal. The Plant Genome. 16:e20308. https://doi.org/10.1002/tpg2.20308


Dweikat I, Braun D, Benjamin B, Teingtham K. 2023. Detection of reproducible QTL associated with bioenergy traits in sorghum across several growing environments. Euphytica. 219:70. https://doi.org/10.1007/s10681-023-03194-1


Dweikat IM, Gelli M, Bernards M, Martin A, Jhala A. 2023. Mutations in the acetolactate synthase (ALS) enzyme affect shattercane (Sorghum bicolor) response to ALS-inhibiting herbicides. Hereditas. 160:28. https://doi.org/10.1186/s41065-023-00291-y


Elbasyoni IS, Eltaher S, Morsy S, Mashaheet AM, Abdallah AM, Ali HG, Mariey SA, Baenziger PS, Frels K. 2022. Novel single-nucleotide variants for morpho-physiological traits involved in enhancing drought stress tolerance in barley. Plants. 11:3072. https://doi.org/10.3390/plants11223072


Elbasyoni IS, Morsy S, Abdelghany AM, Naser M, Mashaheet AM, Abdallah AM, Hefez M, Frels K, Baenziger S. 2023. Nebraska winter wheat unexpected flowering in Egypt: New improvement opportunities. Agron Journal. 115:698-712. https://doi.org/10.1002/agj2.21243


Engelhorn J, Snodgrass SJ, Kok A, Seetharam AS, Schneider M, Kiwit T, Singh A, Banf M, Khaipho-Burch M, Runcie DE, Sanchez Camargo V, Torres-Rodriguez JV, Sun G, Stam M, Fiorani F, Schnable JC, Bass HW, Hufford MB, Stich B, Frommer WB, Ross-Ibarra J, Hartwig T. 2023. Phenotypic variation in maize can largely be explained by genetic variation at transcription factor binding sites. bioRxiv. https://doi.org/10.1101/2023.08.08.551183


Grzybowski MW, Mural RV, Xu G, Turkus J, Yang J, Schnable JC. 2023. A common resequencing-based genetic marker data set for global maize diversity. The Plant Journal. 113:1109-1121. https://doi.org/10.1111/tpj.16123


Guttieri MJ, Bowden RL, Zhang G, Haley S, Frels K, Hein GL, Jordan KW. 2023. Agronomic and quality impact of a shortened translocation for wheat streak mosaic virus resistance. Crop Sci. 63:622-634. https://doi.org/10.1002/csc2.20876


Khound R, Mathivanan RK, Santra DK. 2023. Proso millet nutraceutomics for human health, and nutritional security. In: Kole C. (ed) Compendium of Crop Genome Designing for Nutraceuticals, Springer, Singapore. https://doi.org/10.1007/978-981-19-3627-2_10-1


Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissing TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. 2023. Yield prediction through integration of genetic, environmental, and management data through deep learning. G3 Journal. 13:jkad006. https://doi.org/10.1093/g3journal/jkad006


La Borde N, Rajewski J, Dweikat I. 2023. Novel QRL for chilling tolerance at germination and early seedling stages in sorghum. Frontiers in Genetics. 14:1129460. https://doi.org/10.3389/fgene.2023.1129460


La Menza NC, Arkebauer TJ, Lindquist JL, Monzon JP, Knops JMH, Graef G, Scoby D, Howard R, Rees J, Specht JE, Grassini P. 2023. Decoupling between leaf nitrogen and radiation use efficiency in vegetative and early reproductive stages in high-yielding soybean. Journal of Experimental Bot. 74:352-363. https://doi.org/10.1093/jxb/erac408


Li D, Bai D, Tian Y, Li YH, Zhao C, Wang Q, Guo S, Gu Y, Luan X, Wang R, Yang J, Hawkesford MJ, Schnable JC, Jin X, Qiu LJ. 2023. Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean. Journal of Integrative Plant Biology. 65:117-132. https://doi.org/10.1111/jipb.13380


Lima DC, Castro Aveles A, Alpers RT, McFarland BA, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch CN, Hood E, Hooker DC, Knoll JE, Kolkman JM, Liu S, McKay J, Minyo R, Moreta DE, Murray SC, Nelson R, Schnable JC, Sekhon RS, Singh MP, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Wldekidan T, Wisser RJ, Xu W, de Leon N. 2023. 2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. BMC Genomic Data. 24:29. https://doi.org/10.1186/s12863-023-01129-2


Lima DC, Washburn JD, Verela JI, Chen Q, Gage JL, Romay MC, Holland J, Ertl D, Lopez-Cruz M, Aguate FM, de los Campos G, Kaeppler S, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Ortez OA, Schnable JC, Sekhon RS, Singh MP, Sparks EE, Thompson A, Tuinstra M, Wallace J, Weldekidan T, Xu W, de Leon N. 2023. Genomes to Fields 2022 maize genotype by environment prediction competition. BMC Research Notes. 16:148. https://doi.org/10.1186/s13104-023-06421-z


Magris G, Foria S, Ciani S, Santra DK, Polenghi O, Cerne V, Morgante M, Gaspero GD. 2023. Targeted sequencing of the Panicum miliaceum gene space and genotyping of variant sites from population genetics studies, combined in a single assay, as a tool for broomcorn millet marker assisted breeding. Euphytica. 219(10):102. https://doi.org/10.1007/s10681-023-03228-8


Ray MK, Santra DK, Mishra PK, Das S. 2023. Indigenous Lakadong turmeric of Meghalaya and its future prospects. J Applied Biol and Biotech. 11:133-142. https://doi.org/10.7324/jabb.2023.11516-1


Sahay S, Grzybowski M, Schnable JC, Glowacka K. 2023. Genetic control of photoprotection and photosystem II operating efficiency in plants. New Phytologist. 239(3):1068-1082. https://doi.org/10.1111/nph.18980


Sun G, Wase N, Shu S, Jenkins J, Zhou B, Torres-Rodriguez JV, Chen C, Sandor, L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Pedersen C, Gottilla T, Foltz A, Yu H, O’Malley R, Zhang C, Devos KM, Sigmon B, Yu B, Obata T, Schmulz J, Schnable JC. 2022. Genome of Paspalum vaginatum and the rolw of trehalose mediated autophagy in increasing maize biomass. Nature Communications. 13:7731. https://doi.org/10.1038/s41467-022-3557-8


Sun G, Yu H, Wang P, Lopez-Guerrero M, Mural RV, Mizero ON, Grzybowski M, Song B, van Kijk K, Schachtman DP, Zhang C, Schnable JC. 2023. A role for heritable transcriptomic variation in maize adaptation to temperate environments. Genome Biology. 24:55. https://doi.org/10.1186/s13059-023-02891-3


Wijewardane NK, Zhang H, Yang J, Schnable JC, Schachtman DP, Ge Y. 2023. A leaf-level spectral library to support high-throughput plant phenotyping: predictive accuracy and model transfer. J Exper Bot. 74:4050-4062. https://doi.org/10.1093/jxb/erad129


Xue Y, Ding Y, Wang Y, Wang X, Cao X, Santra DK, Chen L, Qiao Z, Wang R. 2023. Construction of DNA molecular identity card of core germplasm of broomcorn millet in China based on fluorescence SSR. Scientia Agricultura Sinica. 56(12):2249-2261. https://doi,org/10.3864/j.issn.0578-1752.2023.12.002


Zhang W, Danilova T, Zhang M, Ren S, Zhu X, Zhang Q, Zhong S, Kykes L, Fiedler J, Xu S, Frels K, Wegulo S, Boehm Jr J, Cai X. 2022. Cytogenetic and genomic characterization of a novel tall wheatgrass-derived Fhb7 allele integrated into wheat B genome. Theor and Appl Genet. 135:4409-4419. https://doi.org/10.1007/s00122-022-04228-3


North Dakota


Almeida LFA, Correndo A, Ross J, Licht M, Casteel S, Singh M, Naeve S, Vann R, Bais J, Kandel H, Lindsey L, Conley S, Kleinjan J, Kovacs P, Berning D, Hefley T, Reiter M, Hoshouser D, Ciampitti IA. 2023. Soybean yield response to nitrogen and sulfur fertilization in the United States: contribution of soil N and N fixation processes. European Journal of Agron. 145:126791. https://doi.org/10.1016/j.eja.2023.126791


Mathew J, Delavarpour N, Miranda C, Stenger J, Zhang Z, Aduteye J, Flores P. 2023. A novel approach to pod count estimation using a depth camera in support of soybean breeding applications. Sensors. 23(14):6506. https://doi.ort/10.3390/s23146506


Nonoy Bandillo, Hannah Worral, Shana Forster, Thomas Stefaniak, Lisa Piche, Andrew Ross, Shalu Jain, Julie Pasche, Audrey Kalil, Michael Wunsch, Malaika Ebert, Jiajia Rao, Michael Ostlie, Blaine Schatz, John Rickertsen, Cameron Wahlstrom, Meridith Miller, Justin Jacobs, Bryan Hanson, Glenn Martin, William Franck, Chengci Chen, and Kevin McPhee. 2022. Registration of ‘ND Victory’ green field pea. J Plant Reg. https://doi.org/10.1002/plr2.20266


Osorno JM, Simons KJ, Erfatpour M, Vander Wal AJ, Posch J, Grafton KF. 2023. Seed yield improvement in navy bean: Registration of ‘ND Polar’. J Plant Reg. 17(2):255-262. https://doi.org/10.1002/plr2.20284


Pull ZA, Gramig G, Hulke BS, Gossweiler A, Johnson B. 2023. First steps toward developing Lewis flax (Linum lewisii Parsh) as an agronomic crop. Sustainable Agriculture and Food Systems. 38:e38. https://doi.org/10.1017/S1742170523000340


Rahman M, Hoque A. 2023. Flax Breeding. In: You FM, Fofana B (eds) The Flax Genome. Compendium of Plant Genomes. Springer Cham. https://doi.org/10.1007/978-3-031-16061-5_4


Shaikh TM, Rahman M, Smith T, Anderson JV, Chao WS, Horvath DP. 2023. Homozygosity mapping identified loci and candidate genes responsible for freezing tolerance in Camelina sativa. The Plant Genome. 16(2):e20318. https://doi.org/10.1002/tpg2.20318


Simons KJ, Schroder S, Oladzad A, McClean PE, Conner RL, Penner WC, Stoesz DB, Osorno JM. 2022. Modified screening method of middle American dry bean genotypes reveals new genomic regions on Pv10 associated with anthracnose resistance. Front. in Plant Sci. 15:1015583. https://doi.org/10.3389/fpls.2022.1015583


Stefaniak TR, Miller J, Jones CR, Miller M, Yusuf M, Harder MA, Larsen JC, Schmitz CA, Carley D, Haagenson A, Thompson TE, Michaels C, Thill, Shannon LM. 2023. Polaris Gold: An attractive, yellow-fleshed tablestock cultivar with chipping potential. American Journal of Potato Research. 100:71-78. https://doi.org/10.1007/s12230-022-09896-x


Ohio


Arguello-Blanco MN, Sneller CH. 2023. The effect of cycles of genomic selection on the wheat (T. aestivum) genome. Theor Appl Genet. 136:70. https://doi.org/10.1007/s00122-023-04279-0


Asea G, Kwemoi DB, Sneller C, Kasozi CL, Das B, Musundire L, Makumbi D, Beyene Y and Prasanna BM. 2023. Genetic trends for yield and key agronomic traits in pre-commercial and commercial maize varieties between 2008 and 2020 in Uganda. Front. in Plant Sci. 14:1020667. https://doi.org/10.3389/fpls.2023.1020667


Fresnedo-Ramirez J, Anderson ES, D’Amico-Willman K, Gradziel TM. 2023. A review of plant epigenetics through the lens of almond. The Plant Genome. e20367. https://doi.org/10.1002/tpg2.20367


Fresnedo-Ramirez J, Anderson ES, D’Amico-Willman K, Gradziel TM. 2023. Epigenetic regulation in Almond. In Sanchez-Perez R, Fernandez MA, Martinez-Gomez P (eds). The Almond Tree Genome. Compendium of Plant Genomes. Springer. https://doi.org/10.1007/978-3-030-30302-0_5


Goggans ML, Bilbrey EA, Quiroz-Moreno CD, Francis DM, Jacobi SK, Kovac J, Cooperstone JL. 2022. Short-Term Tomato Consumption Alters the Pig Gut Microbiome toward a More Favorable Profile. Microbiology Spectrum. 10:6. https://doi.org/10.1128/spectrum.02506-22


Li B, Gschwend AR, Hovick SM, Guteck A, McHale L, Harrison SK, Regnier EE. 2022. Evolution of weedy giant ragweed (Ambrosia trifida): Multiple origins and gene expression variability facilitates weediness. Ecology and Evolution. 12:9590. https://doi.org/10.1002/ece3.9590


McCoy J, Martínez-Ainsworth N, Bernau V, Scheppler H, Hedblom G, Adhikari A, McCormick A, Kantar M, McHale L, Jardón-Barbolla L, Mercer KL, Baumler D. 2023. Population structure in diverse pepper (Capsicum spp.) accessions. BMC Res Notes. 16:20. https://doi.org/10.1186/s13104-023-06293-3


South Dakota


Brzozowski LJ, Campbell MT, Hu H, Yao L, Caffe M, Gutierrez L, Smith KP, Sorrells ME, Gore MA, Jannink JL. 2023. Genomic prediction of seed nutritional traits in biparental families of oat (Avena sativa). The Plant Genome. e20370. https://doi.org/10.1002/tpg2.20370


Caffe M, Hall L, Hall N, Bauer R, Kleinjan J, Graham C, Ingemansen JA, Turnipseed B, Krishnan P. 2023. Registration of oat cultivar ‘Rushmore’. J of Plant Reg. 17(2):247-254. https://doi.org/10.1002/plr2.20282


Casler MD, Lee D, Mitchell RB, Moore KJ, Adler PR, Sulc RM, Johnson KD, Kallenbach RL, Boe AR, Mathison RD, Cassida KA, Min D, Zhang Y, Ong RG, Sato TK. 2023. Biomass quality responses to selection for increased biomass yield in perennial energy grasses. BioEnergy Research. 16:877-885. https://doi.org/10.1007/s12155-022-10513-2


Wisconsin


Adak A, Murray SC, Calderón CI, Infante V, Wilker J, Varela JI, Subramanian N, Isakeit T, Ané JM, Wallace J, De Leon N, Johnson C. 2023. Genetic Mapping and Prediction for Novel Lesion Mimic in Maize Demonstrates Quantitative Effects from Genetic Background, Environment and Epistasis. Theor and Appl Genet. 136:155. https://doi.org/10.1007/s00122-023-04394-y


Branch CA, Tracy WF. 2023. Divergent selection for timing of vegetative phase change. Crop Sci. 63(4):2196-2204. https://doi.org/10.1002/csc2.21016


Choquette NE, Holland JB, Weldekidan T, Drouault J, de Leon N, Flint-Garcia S, Lauter N, Murray SC, Xu W, Wisser RJ. 2023. Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize. New Phytologist. 238:737-749. https://doi.org/10.1111/nph.18769


Colley MC, Dawson JC, McCluskey C, Myers JR, Tracy WF, Lammerts van Bueren ET. 2022. Exploring the emergence of participatory plant breeding in countries of the global North. The Journal of Agricultural Sci. https://doi.org/10.1017/S0021859621000782


Colley MC, Tracy WF, Lammerts van Bueren E, Diffley M, Almekinders C. 2022. How the seed of participatory plant breeding found its way in the world through adaptive management. Sustainability. 14:2132. https://doi.org/10.3390/su14042132


Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissing TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. 2023. Yield prediction through integration of genetic, environmental, and management data through deep learning. G3 Journal. 13:jkad006. https://doi.org/10.1093/g3journal/jkad006


Kumar R, Brar MS, Kunduru B, Ackerman AJ, Yang Y, Luo F, Saski CA, Bridges WC, de Leon N, McMahan C, Kaeppler SM, Sekhon RS. 2023. Genetic architecture of source-sink-regulated senescence in maize. Plant Physiology. kiad460. https://doi.org/10.1093/plphys/kiad460


Lima DC, Castro Aveles A, Alpers RT, McFarland BA, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch CN, Hood E, Hooker DC, Knoll JE, Kolkman JM, Liu S, McKay J, Minyo R, Moreta DE, Murray SC, Nelson R, Schnable JC, Sekhon RS, Singh MP, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Wldekidan T, Wisser RJ, Xu W, de Leon N. 2023. 2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. BMC Genomic Data. 24:29. https://doi.org/10.1186/s12863-023-01129-2


Lima DC, de Leon N, Kaeppler SM. 2023. Utility of anthesis-silking interval information to predict grain yield under water and nitrogen limited conditions. Crop Sci. 63(1):151-163. https://doi.org/10.1002/csc2.20854


Lima DC, Washburn JD, Verela JI, Chen Q, Gage JL, Romay MC, Holland J, Ertl D, Lopez-Cruz M, Aguate FM, de los Campos G, Kaeppler S, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Ortez OA, Schnable JC, Sekhon RS, Singh MP, Sparks EE, Thompson A, Tuinstra M, Wallace J, Weldekidan T, Xu W, de Leon N. 2023. Genomes to Fields 2022 maize genotype by environment prediction competition. BMC Research Notes. 16:148. https://doi.org/10.1186/s13104-023-06421-z


McFarland FL, Collier R, Walter N, Martinell B, Kaeppler SM, Kaeppler HF. 2023. A key to totipotency: Wuschel-like homeobox 2a unlocks embryogenic culture response in maize (Zea mays L.). Plant Biotech Journal. 21(9):1860-1872. https://doi.org/10.1111/pbi.14098


Pankievicz CVS, Delaux PM, Infante V, Hirsch HH, Rajasekar S, Zamora P, Jayaraman D, Calderon CI, Bennett A, Ané JM. 2022. Nitrogen fixation and mucilage production on maize aerial roots is controlled by aerial root development and border cell functions. Front. in Plant Sci. 13:977056. https://doi.org/10.3389/fpls.2022.977056


Schoemaker DL, McFarland F, Marinell B, Michel KJ, Mathews L, O’Brian D, de Leon N, Kaeppler HF, Kaeppler SM. 2023. A practical method to improve the efficiency of pollination in maize breeding and genetics research. Crop Sci. https://doi.org/10.1002/csc2.21049


Van Gelder K, Oliveira-Filho ER, Messina CD, Venado RE, Wilker J, Rajasekar S, Ane JM, Amthor JS, Hanson AD. 2023. Running the numbers on plant synthetic biology solutions to global problems (2023). Plant Sci. 335:111815. https://doi.org/10.1016/j.plantsci.2023.111815


Varela JI, Miller ND, Infante V, Kaeppler SM, de Leon N, Spalding EP. 2022. A novel high-throughput hyperspectral scanner and analytical methods for predicting maize kernel composition and physical traits. Food Chem. 391:133264. https://doi.org/10.1016/j.foodchem.2022.133264


Wang G, Zhou J, Costa M, Kaeppler SM, Zhang Z. 2023. Plot-level maize early stage stand counting and spacing detection using advanced deep learning algorithms based on UAV imagery. Agronomy. 13(7):1728. https://doi.org/10.3390/agronomy13071728


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