10/05/2022

Abbasi J, Dehghani H, Dvorak J, McGuire PE. 2020. Perennial growth and salinity tolerance in wheat×wheatgrass amphiploids varying in the ratio of wheat to wheatgrass genomes. Plant Breeding 139(6):1281–1289. https://doi.org/10.1111/pbr.12856

Al Bari, M., Zheng, P., Worral, H., Szwiec, S., Ma, Y., Main, D., Coyne, C.J., McGee, R.J., Bandillo, N. 2021. Harnessing genetic diversity in the USDA pea (Pisum sativum L.) germplasm collection through genomic prediction. Frontiers in Genetics. 12:707754. https://doi.org/10.3389/fgene.2021.707754

Boots-Haupt, L., Brasier, K., Saldivar-Menchaca, R., Estrada, S., Prieto-Garcia, J., Jiang, J., Riar, R., Hu, J., & Zakeri, H. (2022). Exploration of global faba bean germplasm for agronomic and nitrogen fixation traits. Crop Science, 00, 1– 12. https://doi.org/10.1002/csc2.20794

Brasier, K, Smither-Kopperl, M, Bullard, V, Young-Matthews, A, Bartow, A, Friddle, M, Bernau, C, Humphrey, M, Dial, H, Wolf, M, Hu, J, & Zakeri, H. A multi-environment analysis of winter faba bean germplasm for cover crop traits. Agronomy Journal.  2021; 113:3051−3064. https://doi.org/10.1002/agj2.20717

Brown, M.M., J.M. Martin, E.M. Jobson, A.C. Hogg, P.M. Carr, and M.J. Giroux. (2022).   Evaluating the impact of Rht hypomorphic mutations in durum wheat.  Crop Science 62, 247-258. https://doi.org/10.1002/csc2.20672

Chandel, A., Khot, L., Yu, L. 2021. Alfalfa (Medicago sativa L.) crop vigor and yield characterization using high resolution aerial multispectral and thermal infrared imaging technique. Computers and Electronics in Agriculture. 182. Article 105999. https://doi.org/10.1016/j.compag.2021.105999

Cox, A., Boots-Haupt, L., Brasier, K., Riar, R., & Zakeri, H. (2022). Using δ¹⁵N to screen for nitrogen fixation: Reference plant position and species. Agronomy Journal, 114, 1842-1850. https://doi.org/10.1002/agj2.21032

Das, S, Porter, LD, Ma, Y, Coyne, CJ, Chaves-Cordoba, B & Naidu, RA (2022) Resistance in lentil (Lens culinaris) genetic resources to the pea aphid (Acyrthosiphon pisum). Entomologia Experimentalis et Applicata 170: 755– 769. https://doi.org/10.1111/eea.13202

Hogg, A. C., Carr, P., Eberly, J., Chen, C., Kowatch-Carlson, C., Crutcher, F., Lamb, P., McNamara, K., Haney, E., Kephart, K., Smith, V., Dykes, L., Chen, X., Huang, , & Giroux, M. (2022). Registration of ‘Lustre’ durum wheat. Journal of Plant Registrations, 16, 576– 584. https://doi.org/10.1002/plr2.20214

Irish, B.M., Greene, S.L. 2021. Germplasm collection, genetic resources, and gene pools in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. p.43-64. https://doi.org/10.1007/978-3-030-74466-3_4

Lin, S., C.A. Medina, S. Norberg, D. Combs, G. Wang, G. Shewmaker, S. Fransen, D. Llewellyn, Long-Xi Yu. 2021. Genome-Wide Association Studies Identifying Multiple Loci Associated with Alfalfa Forage Quality. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2021.648192

LoPresti EF, Pan V, Goidell J, Weber MG, Karban R. (2019) Mucilage-bound sand reduces seed predation by ants but not by reducing apparency: a field test of 53 plant species. Ecology. 2019 Oct;100(10):e02809. https://doi.org/10.1002/ecy.2809

Jobson, E.M., J.M. Martin, R. Sharrock, A.C. Hogg, and M.J. Giroux. (2021a). Identification and molecular characterization of novel Rht-1 alleles in hard red spring wheat. Crop Science. 61:1030–1037. https://doi.org/10.1002/csc2.20375

Jobson, E.M., J-B. Ohm, J.M. Martin, and M.J. Giroux. (2021b) Rht-1 semi-dwarfing alleles increase the abundance of high molecular weight glutenin subunits.  Cereal Chemistry 98:337-345.  https://doi.org/10.1002/cche.10371

Medina, C., Samac, D.A., Yu, L. 2021. Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.). Scientific Reports. 11:17203. https://doi.org/10.1038/s41598-021-96712-x

Medina, C., Yu, L. 2021. Developing SNPs and strategies for genomic analysis in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. pp.159-175. https://doi.org/10.1007/978-3-030-74466-3_10

Pan, VS, M McMunn, R Karban, J Goidell, MG Weber, EF LoPresti. (2021) Mucilage binding to the ground protects seeds of many plants from harvester ants: a functional investigation. Functional Ecology, 35: 2448-2460. https://doi.org/10.1111/1365-2435.13881 

Pan, VS, C Girvin, EF LoPresti. (2022) Attachment strength of seed mucilage prevent seed dislodgement in high surface flow: a mechanistic investigation. Annals of Botany, mcac045, https://doi.org/10.1093/aob/mcac045

Parajuli, A., Yu, L., Peel, M., See, D.R., Wager, S., Norberg, S., Zhang, Z. 2021. Self-incompatibility, inbreeding depression, and potential to develop inbred lines in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. p.255-269. https://doi.org/10.1007/978-3-030-74466-3_15

Parker, T. A., Berny Mier y Teran, J. C., Palkovic, A., Jernstedt, J., & Gepts, P. (2020). Pod indehiscence is a domestication and aridity resilience trait in common bean. New Phytologist, 225(1), 558-570. https://doi.org/10.1111/nph.16164

Parker, T., & Gepts, P. (2021), Population genomics of Phaseolus spp.: A domestication hotspot. In: Rajora OP (ed) Population Genomics: Crop Plants. Springer Nature Switzerland.

Parker, T., Palkovic, A., Brummer, E. C., & Gepts, P. (2021). Registration of ‘UC Sunrise’heirloom‐like orange and white mottled bean. Journal of Plant Registrations, 15(1), 43-47. https://doi.org/10.1002/plr2.20096

Parker, T., Palkovic, A., Brummer, E. C., & Gepts, P. (2021). Registration of ‘UC Southwest Red’ heirloom‐like red and white mottled bean. Journal of Plant Registrations, 15(1), 21-27.   https://doi.org/10.1002/plr2.20092

Parker, T., Palkovic, A., Brummer, E. C., & Gepts, P. (2021). Registration of ‘UC Southwest Gold’ heirloom‐like gold and white mottled bean. Journal of Plant Registrations, 15(1), 48-52.   https://doi.org/10.1002/plr2.20117

Parker, T., Palkovic, A., Brummer, E. C., & Gepts, P. (2021). Registration of ‘UC Rio Zape’ heirloom‐like dry bean. Journal of Plant Registrations, 15(1), 37-42.  https://doi.org/10.1002/plr2.20095

Parker, T., Palkovic, A., Brummer, E. C., & Gepts, P. (2021). Registration of ‘UC Tiger's Eye’ heirloom‐like dry bean. Journal of Plant Registrations, 15(1), 16-20.  https://doi.org/10.1002/plr2.20084

Parker, T.A., Cetz, J., de Sousa, L.L., Kuzay, S., Lo, S., Floriani, T.d.O., Njau, S., Arunga, E., Duitama, J., Jernstedt, J., Myers, J.R., Llaca, V., Herrera-Estrella, A. and Gepts, P. (2022), Loss of pod strings in common bean is associated with gene duplication, retrotransposon insertion and overexpression of PvIND. New Phytol, 235: 2454-2465. https://doi.org/10.1111/nph.18319

Rajendran, K., Coyne, C.J., Zheng, P., Saha, G., Main, D., Amin, N., Ma, Y., Kisha, T.J., Bett, K., Kumar Agrawal, S., McGee, R.J. 2021. Genetic diversity and GWAS of agronomic traits using an ICARDA lentil (Lens culinaris Medik.) Reference Plus collection. Plant Genetic Resources. 1-10. https://doi.org/10.1017/S147926212100006X

Samac, D.A., Yu, L., Missaoui, A.M. 2021. Identification and characterization of disease resistance genes in alfalfa and Medicago truncatula for breeding improved cultivars. In: Yu, X. and Kole, C., editors. The Alfalfa Genome, Compendium of Plant Genomics. Springer, Cham: Switzerland. p. 211-233. https://doi.org/10.1007/978-3-030-74466-3_13

Soler-Garzón, A., A. Oladzad, J. Beaver, S. Beebe, R. Lee, J. Lobaton, E. Macea, P. McClean, B. Raatz, J. C. Rosas, Q. Song, P. N. Miklas. 2021. NAC candidate gene marker for bgm-1 and interaction with QTL for resistance to Bean golden yellow mosaic virus in common bean. Front. Plant Sci. 12:628443. https://doi.org/10.3389/fpls.2021.628443

Tang, Z., Parajuli, A., Chen, C., Hu, Y., Revolinski, S., Medina, C., Lin, S., Zhang, Z., Yu, L. 2021. Validation of UAV-based alfalfa biomass predictability using photogrammetry with fully automatic plot segmentation. Scientific Reports. 11(1). Article 3336. https://doi.org/10.1038/s41598-021-82797-x

Vetch JM, Tillett BJ, Bruckner P, Martin JM, Marlowe K, Hooker MA, See DR, Giroux MJ. TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting. Plant Genome. 2022 Aug 16:e20250. https://doi.org/10.1002/tpg2.20250. Epub ahead of print. PMID: 35971881

Volk, G.M., Byrne, P.F., Coyne, C.J., Flint Garcia, S.A., Reeves, P.A., Richards, C.M. 2021. Integrating genomic and phenomic approaches to support plant genetic resources conservation and use. Plants. 10(11). Article e2260. https://doi.org/10.3390/plants10112260

Volkman, M.M., J.M. Martin, A.C. Hogg, L. Wright, C. Hale, P.M. Carr, and M.J. Giroux. (2022) Teosinte Branched 1 mutations increase tillering.  Crop Science 62:1522-1530. https://doi.org/10.1002/csc2.20775

Weeden, N., Coyne, C., Lavin, M., McPhee, K. E. (2021) Distinguishing among Pisum accessions using a hypervariable intron within Mendel’s green/yellow cotyledon gene. no. Genetic Resources and Crop Evolution: v. 68 p. 2591-2609.

Yu, L., Medina, C., Peel, M. 2021. Genetic and genomic assessments for improving drought resilience in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. p.235-253. https://doi.org/10.1007/978-3-030-74466-3_14

09/08/2023

Arkwazee, H.A., Wallace, L.T., Hart, J.P., Griffiths, P.D. and Myers, J.R., 2022. Genome-Wide Association Study (GWAS) of White Mold Resistance in Snap Bean. Genes, 13(12), p.2297.

Atanda S.A., J. Steffes, Y. Lan, Md. A. Al Bari, J. Kim, M. Morales, J. Johnson, R.A. Saludares, H. Worral, L.Piche, A. Ross, M.A. Grusak, C. Coyne, R. McGee, J. Rao, N. Bandillo. 2022. A. Multi‐trait genomic prediction improves selection accuracy for enhancing seed mineral concentrations in pea. The Plant Genome. 2022 Dec 1:e20260.

Carney M., J. d’Alpoim Guedes, E. Wohlgemuth, and S. Tushingham. 2022. Bulbs and biographies, pine nuts and palimpsests: exploring plant diversity and earth oven reuse at a Late Period Plateau site. Archeol. Anthropol. Sci. 14:130. DOI: https://doi.org/10.1007/s12520-022-01588-1

Clare, S. 2022. Genetic characterization of barley and Pyrenophora teres host pathogen interactions. Ph.D. thesis, Washington State University.

Das S, Porter LD, Ma Y, Coyne CJ, Chaves‐Cordoba B, Naidu RA. 2022. Resistance in lentil (Lens culinaris) genetic resources to the pea aphid (Acyrthosiphon pisum). Entomologia Experimentalis et Applicata. 170(8):755-69.

He X, Zhang F, He F, Shen Y, Yu LX, Zhang T, Kang J. 2022. Accuracy of genomic selection for alfalfa biomass yield in two full-sib populations. Frontiers in Plant Science. 13.

Heineck GC, Altendorf KR, Coyne CJ, Ma Y, McGee R, Porter LD. 2022. Phenotypic and Genetic Characterization of the Lentil Single Plant-Derived Core Collection for Resistance to Root Rot Caused by Fusarium avenaceum. Phytopathology. 112(9):1979-87.

Jiang X, Yu A, Zhang F, Yang T, Wang C, Gao T, Yang Q, Yu LX, Wang Z, Kang J. 2022. Identification of QTL and candidate genes associated with biomass yield and Feed Quality in response to water deficit in alfalfa (Medicago sativa L.) using linkage mapping and RNA-Seq. Frontiers in Plant Science. 13.

Jiao YX, He XF, Song R, Wang XM, Zhang H, Aili R, Chao YH, Shen YH, Yu LX, Zhang TJ, Jia SG. 2022. Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes. Journal of Systematics and Evolution. https://doi.org/10.1111/jse.12900.

Johnson RC, Love SL, Carver D, Irish BM. 2022. Using climate driven adaptive evolution to guide seed sourcing for restoration in a diverse North American herb‐shrub. Restoration Ecology. :e13856.

Lin S, Niu Y, Medina CA, Yu LX. 2022. Two linked resistance genes function divergently in defense against Verticillium Wilt in Alfalfa. Plant Biotechnology Journal. (4):619.

Long R, Zhang F, Zhang Z, Li M, Chen L, Wang X, Liu W, Zhang T, Yu LX, He F, Jiang X. 2022. Genome assembly of alfalfa cultivar zhongmu-4 and identification of SNPs associated with agronomic traits. Genomics, proteomics & bioinformatics. (1):14-28.

McDonough, Katelyn N., Jaime L. Kennedy, Richard L. Rosencrance, Justin A. Holcomb, Dennis L. Jenkins, and Kathryn Puseman. 2022. Expanding Paleoindian Diet Breadth: Paleoethnobotany of Connley Cave 5, Oregon, USA. American Antiquity 87(2): 303–332.

Mehlenbacher, S.A., B.J. Heilsnis, R.T. Mooneyham and J.W. Snelling. 2023. Breeding hazelnuts resistant to eastern filbert blight. Acta Hortic. 1362: 557-561. https://doi.org/10.17660/ActaHortic.2023.1362.75 

Mehlenbacher, S.A., D.C. Smith, R.L. McCluskey, J.W. Snelling, T.J Molnar, and A. Clare. 2022. OSU 541.147 hazelnut. HortScience 58(3): 333-337.  https://doi.org/10.21273/HORTSCI16987-22   

Nemchinov LG, Irish BM, Grinstead S, Shao J, Vieira P. 2022. Diversity of the virome associated with alfalfa (Medicago sativa L.) in the US Pacific Northwest. Scientific Reports. 12(1):8726.

Parker TA, Gallegos JA, Beaver J, Brick M, Brown JK, Cichy K, Debouck DG, Delgado‐Salinas A, Dohle S, Ernest E, de Jensen CE. 2022. Genetic resources and breeding priorities in Phaseolus beans: vulnerability, resilience, and future challenges. Plant Breeding Reviews. 46:289-420.

Puig AS, Irish B, Ayala-Silva T, Wurzel S, Gutierrez O. 2022. Effect of Cacao Black Pod Rot Screening Method on Disease Reaction Determination. Chemistry Proceedings. 10(1):71.

Qian, Y.L., Hua, G.K.H., Scott, J.C., Dung, J.K.S., and Qian, M.C. 2022. Evaluation of sulfur-based biostimulants for the germination of Sclerotium cepivorum sclerotia and their interaction with soil. J. Agric. Food Chem. 70:15038−15045. 

Renzi JP, Coyne CJ, Berger J, Von Wettberg E, Nelson M, Ureta S, Hernández F, Smýkal P, Brus J. 2022. How could the use of crop wild relatives in breeding increase the adaptation of crops to marginal environments? Frontiers in Plant Science. 13.

Revolinski S., P. Maughan, C. Coleman, I. Burke. 2023. Preadapted to adapt: underpinnings of adaptive plasticity revealed by the downy brome genome. Commun. Biol. 6:326.  DOI: https://doi.org/10.1038/s42003-023-04620-9. 

Travis A. Parker, Jorge Acosta Gallegos, James Beaver, Mark Brick, Judith K. Brown, Karen Cichy, Daniel G. Debouck, Alfonso Delgado-Salinas, Sarah Dohle, Emmalea Ernest, Consuelo Estevez de Jensen, Francisco Gomez, Barbara Hellier, Alexander V. Karasev, James D. Kelly, Phillip McClean, Phillip Miklas, James R. Myers, Juan M. Osorno, Julie S. Pasche, Marcial A. Pastor-Corrales, Timothy Porch, James R. Steadman, Carlos Urrea, Lyle Wallace, Christine H. Diepenbrock, Paul Gepts. 2022. Genetic resources and breeding priorities in Phaseolus beans: vulnerability, resilience, and future challenges. Plant Breeding Reviews, 46, pp.289-420.

Wang Y, Li W, Wang L, Yan J, Lu G, Yang N, Xu J, Wang Y, Gui S, Chen G, Li S. 2022. Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize. Nature Communications. 13(1):4498.

Warburton ML, Jeffers D, Smith JS, Scapim C, Uhdre R, Thrash A, Williams WP. 2022. Comparative Analysis of Multiple GWAS Results Identifies Metabolic Pathways Associated with Resistance to A. flavus Infection and Aflatoxin Accumulation in Maize. Toxins. 14(11):738.

Yang W, Guo T, Luo J, Zhang R, Zhao J, Warburton ML, Xiao Y, Yan J. 2022. Target-Oriented Prioritization: targeted selection strategy by integrating organismal and molecular traits through predictive analytics in breeding. Genome Biology. 23(1):80.