10/14/2022

1. Akarapipad A, Kaarj K, Breshears LE, Sosnowski K, Baker B, Nguyen BT, Eades C, Uhrlaub JL, Quick G, Nikolich-Zugich J, Worobey M, and Yoon J-Y, "Smartphone-based Sensitive Detection of SARS-CoV-2 from Saline Gargle Samples via Flow Profile Analysis on Paper Microfluidic Chip," Biosensors and Bioelectronics, 2022, 207: 114192.


2. Angelé-Martínez, C., F.S. Ameer, Y.S. Raval, G. Huang, T.R.J. Tzeng, J.N Anker, J. Brumaghim (2022) Polyphenol effects on CuO-nanoparticle-mediated DNA damage, reactive oxygen species generation, and fibroblast cell death. Toxicology in Vitro 78: 105252.


3. Breshears LE, Nguyen BT, Akarapipad P, Sosnowski K, Kaarj K, Quirk G, Uhrlaub JL, Nikolich-Zugich J, Worobey M, and Yoon J-Y, "Sensitive, Smartphone-based SARS-CoV-2 Detection from Clinical Saline Gargle Samples," PNAS Nexus, 2022, 1(1): pgac028.


4. Breshears LE, Nguyen BT, Mata-Robles S, Wu L, and Yoon J-Y, "Biosensor Detection of Airborne Respiratory Viruses Such As SARS-CoV-2," SLAS Technology, 2022, 27(1): 4-17.


5. Bahng EJ, Rutenberg A, Gomes C. Spectrum and Matrix of Inclusion Tendencies and Experiences using Narrative Stories, Iowa State Conference on Race and Ethnicity, 23(1), 2022


6. Buchanan BC and Yoon J-Y, "Microscopic Imaging Methods for Organ-on-a-Chip Platforms," Micromachines, 2022, 13: 328.


7. Buchanan BC, Safavinia B, Wu L, and Yoon J-Y, "Smartphone-Based Autofluorescence Imaging to Detect Bacterial Species on Laboratory Surfaces," Analyst, 2022, 147: 2980-2987. Analyst HOT Articles 2022.


8. Day AS, Ulep T-H, Budiman E, Dieckhaus L, Safavinia B,  Hertenstein T, Yoon J-Y, "Contamination-resistant, Rapid Emulsion-based Isothermal Nucleic Acid Amplification with Mie-scatter Inspired Light Scatter Analysis for Bacterial Identification," Scientific Reports, 2021, 11: 19933.


9. Diaz, L. M., B. E. Lee, and D. M. Jenkins. 2021. Real-time optical analysis of a colorimetric LAMP assay for SARS-CoV-2 in saliva with a handheld instrument improves accuracy compared to endpoint assessment. Journal of Biomolecular Techniques. 32(3): 158–171. https://doi.org/10.7171/jbt.21-3203-011.


10. Domingo, R., C. Perez, D. Klair, H. Vu, A. Candelario-Tochiki, X. Wang, A. Camson, J. N. Uy, M. Salameh, D. Arizala, S. Dobhal, G. Boluk, J.-P. Bingham, F. Ochoa-Corona, M. E. Ali, J. P. Stack, J. Fletcher, J. Odani, D. M. Jenkins, A. M. Alvarez, and M. Arif, M. 2021. Genome-informed loop-mediated isothermal amplification assay for specific detection of Pectobacterium parmentieri in infected potato tissues and soil. Sci. Rep. 11, 21948. https://doi.org/10.1038/s41598-021-01196-4.


11. Chen* C., Unrine J.M., Hu Y., Guo L., Tsyusko O.V., Fan Z., Liu S., Wei G. 2021. Responses of soil bacteria and fungal communities to pristine and sulfidized zinc oxide nanoparticles relative to Zn ions. Journal of Hazardous Materials 405, 124258.


12. Choo, K. W., Dhital, R., Mao, L., Lin, M., Mustapha, A. 2021. Development of polyvinyl alcohol/chitosan/ modified bacterial nanocellulose films incorporated with 4-hexylresorcinol for food packaging applications. Food Packag. Shelf Life. 30, 100769


13. Cícero C Pola, Sonal V Rangnekar, Robert Sheets, Beata M Szydłowska, Julia R Downing, Kshama W Parate, Shay G Wallace, Daphne Tsai, Mark C Hersam, Carmen L Gomes, Jonathan C Claussen, Aerosol-jet-printed graphene electrochemical immunosensors for rapid and label-free detection of SARS-CoV-2 in saliva, 2D materials, 9(3), 035016, 2022.


14. Diehl, M., Kang, M.J., Reyes-De-Corcuera, J.I.* (2022) Effect of high-pressure technologies on enzymes used in nonfood processing applications in Effect of High Pressure Technologies on Enzymes, Leite Júnior, B. and Tribst, A., Editors. Academic Press. In press


15. Eke J., Banks L., Mottaleb M.A., Morris A.J., Tsyusko O.V., and Escobar* I.C. 2021. Dual-Functional Phosphorene Nanocomposite Membranes for the Treatment of Perfluorinated Water: An Investigation of perfluorooctanoic acid removal via filtration combined with ultraviolet irradiation or oxygenation. Membranes 11, no. 1: 18.


16. Eluchie C, Hu H, Johnson Z, Gomes C, Claussen J, Hu H, An Explorative Study to Use Graphene-based Materials for Aircraft Icing Mitigation, AIAA AVIATION 2022 Forum, 4115, 2022. https://doi.org/10.2514/6.2022-4115.vid


17. Hjort R, Gomes CL, The Importance of Sensors in Water Quality Research and Monitoring, Resource Magazine, 29(4), 17-19, 2022


18. Hjort, R.G., R.R.A. Soares, J. Li, D. Jing, L. Hartfiel, B. Chen, B. Van Belle, M. Soupir, E. Smith, E.S. McLamore, J.C. Claussen, C.L. Gomes (2022) Hydrophobic laser-induced graphene potentiometric ion-selective electrodes for nitrate sensing. Microchimica Acta 189 (3), 1-11.


19. Jiao, C., Z. Guo, J. Gong, Y. Zuo, S. Li, D. Vanegas, E.S. McLamore, Y. Shen (2022) CML8 and GAD4 function in (Z)–3–hexenol–mediated defense by regulating γ–aminobutyric acid accumulation in Arabidopsis. Plant Physiology and Biochemistry 186, 135-144.


20. Kim S, Patarajarin Akarapipad, Brandon T. Nguyen, Lane E. Breshears, Katelyn Sosnowski, Jacob Baker, Jennifer L. Uhrlaub, Janko Nikolich-Zugich, and Jeong-Yeol Yoon, "Direct Capture and Smartphone Quantification of Airborne SARS-CoV-2 on a Paper Microfluidic Chip," Biosensors and Bioelectronics, 2022, 200: 113912


21. Kim S, Day AS, and Yoon J-Y, "Machine Learning Classification of Bacterial Species Using Mix-and-Match Reagents on Paper Microfluidic Chips and Smartphone-based Capillary Flow Analysis," Analytical and Bioanalytical Chemistry, 2022, 414: 3895-3904.


22. Kim S, Ciara Eades, and Yoon J-Y, "COVID-19 Variants’ Cross-Reactivity on the Paper Microfluidic Particle Counting Immunoassay," Analytical and Bioanalytical Chemistry, 2022, doi:10.1007/s00216-022-04333-8. Papers in Forefront.


23. Lee, B.-E., T. Kang,  M. Jenkins, Y. Li, M. Wall, and S. Jun. 2022. A single-walled carbon nanotubes-based electrochemical impedance immunosensor for on-site detection of Listeria monocytogenes. Journal of Food Science. 87(1): 280-288. 10.1111/1750-3841.15996


24. Liang Y, Avory Zhou, Candace S. Bever, Luisa W. Cheng, and Jeong-Yeol Yoon, "Smartphone-Based Paper Microfluidic Competitive Immunoassay for the Detection of Alpha-Amanitin from Mushrooms," Microchimica Acta, 2022, 189: 322.


25. Liang Y, Avory Zhou, and Jeong-Yeol Yoon, "Machine Learning-Based Quantification of (-)-trans-delta-Tetrahydrocannabinol from Human Saliva Samples on a Smartphone-Based Paper Microfluidic Platform," ACS Omega, 2022, 7(34): 30064–30073.


26. Lin, M.-H., Sun, L., Kong, F., Lin, M. 2021. Rapid detection of paraquat residues in green tea using surface-enhanced Raman spectroscopy (SERS) coupled with gold nanostars. Food Control. 130, 108280.


27. Mannier C and Yoon J-Y, "Progression of LAMP as a Result of the COVID-19 Pandemic: Is PCR Finally Rivaled?" Biosensors, 2022, 12: 492.


28. McLamore, E.S., G. Moreira, D.C. Vanegas, S.P.A. Datta (2022) Context-Aware Diagnostic Specificity (CADS). Biosensors 12 (2), 101.


29. Oliveira, D.A., S. Althawab, E.S. McLamore, C.L. Gomes (2021) One-step fabrication of stimuli-responsive chitosan-platinum brushes for Listeria monocytogenes detection. Biosensors, 1(12), 511; DOI: 10.3390/bios11120511.


30. Reyes-De-Corcuera, J.I.* (2022) Enzymes – Inspring evolutionary wisdom. In nanozymes, advances and applications. Gunasekaran, S., Editor, CRC Press. 1-14.


31. Sosnowski K, Loh A, Zubler AV, Shir H, Ha SY, Yim UH, Yoon J-Y, "Machine Learning Techniques for Chemical and Type Analysis of Ocean Oil Samples via Handheld Spectrophotometer Device," Biosensors and Bioelectronics: X, 2022, 10: 100128.


32. Summerlin, H., C.C Pola, K.R. Chamakura K. Borel, R. Young, T. Gentry, E.S. McLamore, R. Karthikeyan, C. Gomes, (2021). Fate of enteric viruses during leafy greens (romaine lettuce) production using treated municipal wastewater and AP205 bacteriophage as a surrogate. J. Environmental Science and Health, Part A. 56(10): 1138-1144.


33. Sun J, Liu X, Wang Z, Yin F, Liu H, Nakamura Y, Yu C, Zhou D, Gastrointestinal digestion and absorption characterization in vitro of zinc‐chelating hydrolysate from scallop adductor (Patinopecten yessoensis), Journal of the Science of Food and Agriculture, 102(8), 3277-3286, 2022. https://doi.org/10.1002/jsfa.11673.


34. Wang Z, Sun J, Ma X, Liu X, Yin F, Li D, Nakamura Y, Yu C, Zhou D, Characterization of a synthetic zinc‐chelating peptide from sea cucumber (Stichopus japonicus) and its gastrointestinal digestion and absorption in vitro, Journal of the Science of Food and Agriculture, 2022, https://doi.org/10.1002/jsfa.11811


35. Xie Y, Yu X, Wang Y, Yu C, Prakash S, Zhu B, Dong X, Role of dietary fiber and flaxseed oil in altering the physicochemical properties and 3D printability of cod protein composite gel, Journal of Food Engineering, 327, 111053, 2022 https://doi.org/10.1016/j.jfoodeng.2022.111053


36. Xie Y, Yu X, Wang Z, Yu C, Prakash S, Dong X, The synergistic effects of myofibrillar protein enrichment and homogenization on the quality of cod protein gel. Food Hydrocolloids, 127, 107468, 2022 https://doi.org/10.1016/j.biortech.2021.126626


37. Yoon J-Y, "Tissue Engineering: A Primer with Laboratory Demonstrations," Springer: Cham, Switzerland, 2022, ISBN: 978-3-030-83695-5.


38. Yin S, Zhang W, Tong T, Yu C, Chang X, Chen K, Xing Y, Yang Y, Feedstock-dependent abundance of functional genes related to nitrogen transformation controlled nitrogen loss in composting, Bioresource Technology, 2022, https://doi.org/10.1016/j.biortech.2021.126626


39. Yu C, Takhistov P, Alocilja E, Reyes de Corcuera J, Frey MW, Gomes CL, Mao Y, McLamore ES, Lin M, Tsyusko OV, Tzeng T-R, Yoon J-Y, Zhou A, Bioanalytical approaches for the detection, characterization, and risk assessment of micro- and nano-plastics in agriculture and food systems, Analytical and Bioanalytical Chemistry, 2022. https://doi.org/10.1007/s00216-022-04069-5.


40. Yu X, Wang Y, Xie Y, Wei S, Ding H, Yu C, Dong X, Gelation properties and protein conformation of Grass Carp fish ball as influenced by egg white protein, Journal of Texture Studies. 2022. https://doi.org/10.1111/jtxs.12668


41. Yu W, Wang Z, Pan Y, Jiang P, Pan J, Yu C, Dong X, Effect of κ-carrageenan on quality improvement of 3D printed Hypophthalmichthys molitrix-sea cucumber compound surimi product, LWT, 154, 112279, 2022. https://doi.org/10.1016/j.lwt.2021.112279


42. Zachary T Johnson, Nathan Jared, John K Peterson, Jingzhe Li, Emily A Smith, Scott A Walper, Shelby L Hooe, Joyce C Breger, Igor L Medintz, Carmen Gomes, Jonathan C Claussen, Enzymatic Laser‐Induced Graphene Biosensor for Electrochemical Sensing of the Herbicide Glyphosate, Global Challenges, 6(9), 2200057, 2022 https://doi.org/10.1002/gch2.202200057.


43. Zenhausern R, Alexander S. Day, Babak Safavinia, Seungmin Han, Paige E. Rudy, Young-Wook Won, and Jeong-Yeol Yoon, "Natural Killer Cell Detection, Quantification, and Subpopulation Identification on Paper Microfluidic Cell Chromatography Using Smartphone-based Machine Learning Classification," Biosensors and Bioelectronics, 2022, 200: 113916.


44. Zhang W., Karagiannidis I., Van Vliet E.D.S, Yao R., Beswick E., Zhou A., "Effects of granulocyte colony-stimulating factor on colon and breast cancer cells investigated by machine learning based non-invasive Raman spectroscopy", Analyst. 2021, 146, 6124-6131


45. Zhang W, Yu C, Wang X, Yin S, Chang X, Additives improved saprotrophic fungi for formation of humic acids in chicken manure and corn stover mix composting, Bioresource Technology, 346, 126626, 2022, https://doi.org/10.1016/j.biortech.2021.126626


46. Zhao, Y., Zhang, W., Devener, B.V., Bunch, T.D., Zhou, A., Isom, S. Clay, “In situ characterization of porcine fibroblasts in response to silver ions by Raman spectroscopy and liquid scanning transmission electron microscopy”, Talanta, 2022, 246 (15) 123522.

10/05/2023

1. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Rapid Isolation of Low-level Carbapenem-Resistant E. coli from Water and Foods Using Glycan-Coated Magnetic Nanoparticles, Biosensors 2023, 13(10), 902; https://doi.org/10.3390/bios13100902


2. Caliskan-Aydogan O1 and Alocilja EC3. 2023. A Review of Carbapenem Resistance in Enterobacterales and Its Detection Techniques. Microorganisms, 2023, 11(6), 1491; https://doi.org/10.3390/microorganisms11061491


3. Sharief, S. A., Caliskan-Aydogan, O., & Alocilja, E. C. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce. Food Control, 150 (2023) 109770


4. Boodoo C1, Dester E1, David J1, Patel V1, Rabin KC, and Alocilja EC3. 2023. Multi-Probe Nano-Genomic Biosensor to Detect S. aureus from Magnetically-Extracted Food Samples, Biosensors, accepted, in press. Biosensors 2023, 13(6), 608


5. Sharief S1, Caliskan-Aydogan O1, Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce, Food Control, Vol. 150, 109770.


6. Boodoo C1, Dester E1, Sharief S1, and Alocilja EC3. 2023. Influence of Biological and Environmental Factors in the Extraction and Concentration of Foodborne Pathogens using Glycan-Coated Magnetic Nanoparticles,  Journal of Food Protection, 86(4):100066.


7. Sharief SA1, Caliskan-Aydogan O1, and Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for point-of-use food contamination testing, Biosensors and Bioelectronics: X, 13 (2023), 100322, 9 pp.


8. Bhattarai RK1,3, Basnet HB, Dhakal IP, Alocilja E. 2023. Virulence genes of avian pathogenic Escherichia coli isolated from commercial chicken in Nepal, Comparative Immunology, Microbiology and Infectious Diseases, 95 (2023) 101961,


9. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Nanoparticle-Based Plasmonic Biosensor for the Unamplified Genomic Detection of Carbapenem-Resistant Bacteria, Diagnostics, Diagnostics 2023, 13(4), 656


10. Yuanzhi Bian, Debra L. Walter, Chenming Zhang. Efficiency of interferon-γ in activating dendritic cells and its potential synergy with toll-like receptor agonists. Viruses (MDPI). 2023, 15, 1198.doi.org/10.3390/v15051198.


11. Hajikhani, M., Zhang, Y., Gao, X., Lin, M. 2023. Advances in CRISPR-based SERS detection of food contaminants: A review. Trends Food Sci. Technol. 138, 615-627.


12. Wang, W., Yu, Z., Lin, M., Mustapha, A. 2023. Toxicity of silver nanoparticle incorporated-bacterial nanocellulose to human cells and intestinal bacteria. Int. J. Biol. Macromol. 241, 124705.


13. Weng, Z., You, Z., Li, H., Wu, G., Song, Y., Sun, H., Fradlin, A., Neal-Harris, C., Lin, M., Gao, X., Zhang, Y. 2023. CRISPR-Cas12a biosensor array for ultrasensitive detection of unamplified DNA with single-nucleotide polymorphic discrimination. ACS Sensors. 8(4), 1489-1499.


14. Asgari, S., Dhital, R., Mustapha, A., Lin, M. 2022. Duplex detection of foodborne pathogens using a SERS optofluidic sensor coupled with immunoassay. Int. J. Food Microbiol. 383, 109947.


15. Hajikhani, M., Lin, M. 2022. A review on designing nanofibers with high porous and rough surface via electrospinning technology for rapid detection of food quality and safety attributes. Trends Food Sci. Technol. 128, 118-128.


16. Asgari, S., Dhital, R., Ali Aghvami, S., Mustapha, A., Zhang, Y., Lin, M. 2022. Separation and detection of E. coli O157:H7 using a SERS-based microfluidic immunosensor. Microchimica Acta. 189, 111.


17. Diehl, M., Kang, M.J., Reyes-De-Corcuera, J.I.* (2023) Effect of high-pressure technologies on enzymes used in nonfood processing applications in Effect of High-Pressure Technologies on Enzymes, Leite Júnior, B. and Tribst, A., Editors. Academic Press, 405-424.


18. Tong T,* Qi Y, Bussiere L, Dhar D, Miller C, Yu C, Wang Q, Rational Design of Oral Vaccines by Gut Organoid Mucosal Models, Bioactive Materials, 2023, 30, 116-128, https://doi.org/10.1016/j.bioactmat.2023.07.014


19. Zhao M, Cao X, Wu Y, Zou S, Li Z, Lin X, Ji C, Dong L, Zhang S, Yu C, Liang H, Effects of prebiotics on the fermentation of traditional suancai of Northeast China, Food Science and Human Wellness, 2023, https://doi.org/10.26599/FSHW.2022.9250114


20. Zhou Y, Zheng J, Zhao J, Li S, Xing J, Ai C, Yu C, Yang S, Yang J, Oxygenated storage alleviates autolysis of the sea cucumber Apostichopus japonicus during transport. Aquaculture International, 2023. https://doi.org/10.1007/s10499-023-01108-5


21. Zhang W, Yu C, Yin S, Chang K, Chen K, Xing Y, Yang Y, Transmission and retention of antibiotic resistance genes (ARGs) in chicken and sheep manure composting, Bioresource Technology, 382, 129190, 2023. https://doi.org/10.1016/j.biortech.2023.129190


22. Wang Z, Yu X*, Zhao W, Wang Y, Li S, Yu C, Dong X, 3D printability of sturgeon paste as affected by colloid milling. Journal of Food Engineering, 346, 111429, 2023, https://doi.org/10.1016/j.jfoodeng.2023.111429


23. Chen KS, Yu C, Cai L, Zhang W, Xing Y, Yang Y, Bacterial community succession in aerobic-anaerobic-coupled and aerobic composting with mown hay affected C and N losses, Environmental Science and Pollution Research, 2023, https://doi.org/10.1007/s11356-023-27572-3


24. He Q*, Tong TJ*, Yu C and Wang Q, Advances in Algin and Alginate-Hybrid Materials for Drug Delivery and Tissue Engineering, Marine Drugs, 21(1), 14, 2023, https://doi.org/10.3390/md21010014


25. Leng L, Zou H, Wang Y, Yu C, Qi H, Seaweed Slurry Improved Gel Properties and Enhanced Protein Structure of Silver Carp (Hypophthalmichthys molitrix) Surimi, Foods, 11(19), 3115, 2022, https://doi.org/10.3390/foods11193115


26. Liu Y*, Wang Z, Huang Y, Konno K, Tong T*, Yu C, Zhu B, Dong X, Characteristic stable structure of the myosin rod in dark muscle of yellowtail kingfish (Seriola aureovittata), International Journal of Food Science and Technology, 2022, https://doi.org/10.1111/ijfs.16146