NRSP10: National Database Resources for Crop Genomics, Genetics and Breeding Research

(National Research Support Project Summary)

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SAES-422 Reports

01/15/2022

Staton, M., Cannon, E., Sanderson, L.A., Wegrzyn, J., Anderson, T., Buehler, S., Cobo-Simón, I., Faaberg, K., Grau, E., Guignon, V. and Gunoskey, J., 2021. Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in bioinformatics, 22(6), p.bbab238. https://doi.org/10.1093/bib/bbab238

Jung, S., Lee, T., Gasic, K., Campbell, B.T., Yu, J., Humann, J., Ru, S., Edge-Garza, D., Hough, H. and Main, D., 2021. The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, baab054, 2021. https://doi.org/10.1093/database/baab054

Jung, S., Cheng, C.H., Buble, K., Lee, T., Humann, J., Yu, J., Crabb, J., Hough, H. and Main, D., 2021. Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, baab023, 2021. https://doi.org/10.1093/database/baab023

Edge-Garza, D.A., Villamil-Castro, M., Main, D. and Hardner, C., 2021. Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array. Tree Genetics & Genomes, 17(2), pp.1-4. https://doi.org/10.1007/s11295-021-01500-3

Ru, S., Hardner, C., Evans, K., Main, D., Carter, P.A., Harshman, J., Sandefur, P., Edge-Garza, D. and Peace, C., 2021. Empirical evaluation of multi-trait DNA testing in an apple seedling population. Tree Genetics & Genomes, 17(1), pp.1-10. https://doi.org/10.1007/s11295-021-01494-y

Hardner, C., Kumar, S., Main, D. and Peace, C., 2021. Global Genomic Prediction in Horticultural Crops: Promises, Progress, Challenges and Outlook. Frontiers of Agricultural Science and Engineering, 2021, 8(2): 353–355. https://doi.org/10.15302/J-FASE-2021387

Callahan, A.M., Zhebentyayeva, T.N., Humann, J.L., Saski, C.A., Galimba, K.D., Georgi, L.L., Scorza, R., Main, D. and Dardick, C.D., 2021. Defining the ‘HoneySweet’insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica). Horticulture research, 8(1), pp.1-13. https://doi.org/10.1038/s41438-020-00438-2

Rajendran, K., Coyne, C.J., Zheng, P., Saha, G., Main, D., Amin, N., Ma, Y., Kisha, T., Bett, K.E., McGee, R.J. and Kumar, S., 2021. Genetic diversity and GWAS of agronomic traits using an ICARDA lentil (Lens culinaris Medik.) Reference Plus collection. Plant Genetic Resources, 19(4), pp.279-288. https://doi.org/10.1017/S147926212100006X

Ramsay, L., Koh, C.S., Kagale, S., Gao, D., Kaur, S., Haile, T., Gela, T.S., Chen, L.A., Cao, Z., Konkin, D.J. and Toegelová, H., 2021. Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species. bioRxiv. https://doi.org/10.1101/2021.07.23.453237

Iezzoni, A.F., McFerson, J., Luby, J., Gasic, K., Whitaker, V., Bassil, N., Yue, C., Gallardo, K., McCracken, V., Coe, M. and Hardner, C., 2020. RosBREED: bridging the chasm between discovery and application to enable DNA-informed breeding in rosaceous crops. Horticulture research, 7(1), pp.1-23. https://doi.org/10.1038/s41438-020-00398-7

Zurn, J.D., Driskill, M., Jung, S., Main, D., Yin, M.H., Clark, M.C., Cheng, L., Ashrafi, H., Aryal, R., Clark, J.R. and Worthington, M., 2020. A Rosaceae family-level approach to identify loci influencing soluble solids content in blackberry for DNA-informed breeding. G3: Genes, Genomes, Genetics, 10(10), pp.3729-3740. https://doi.org/10.1534/g3.120.401449

Hellwig, T., Flor, A., Saranga, Y., Coyne, C.J., Main, D., Sherman, A., Ophir, R. and Abbo, S., 2020. Environmental and genetic determinants of amphicarpy in Pisum fulvum, a wild relative of domesticated pea. Plant Science, 298, p.110566. https://doi.org/10.1016/j.plantsci.2020.110566

Coe, M.T., Evans, K.M., Gasic, K. and Main, D., 2020. Plant breeding capacity in US public institutions. Crop Science, 60(5), pp.2373-2385. https://doi.org/10.1002/csc2.20227

Vanderzande, S., Zheng, P., Cai, L., Barac, G., Gasic, K., Main, D., Iezzoni, A. and Peace, C., 2020. The cherry 6+ 9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific reports, 10(1), pp.1-14. https://doi.org/10.1038/s41598-020-64438-x

Liu, Z., Ma, H., Jung, S., Main, D. and Guo, L., 2020. Developmental mechanisms of fleshy fruit diversity in Rosaceae. Annual Review of Plant Biology, 71, pp.547-573. https://doi.org/10.1146/annurev-arplant-111119-021700

Whitaker, V.M., Knapp, S.J., Hardigan, M.A., Edger, P.P., Slovin, J.P., Bassil, N.V., Hytönen, T., Mackenzie, K.K., Lee, S., Jung, S. and Main, D., 2020. A roadmap for research in octoploid strawberry. Horticulture research, 7(1), pp.1-17. https://doi.org/10.1038/s41438-020-0252-1

Ma, Y., Marzougui, A., Coyne, C.J., Sankaran, S., Main, D., Porter, L.D., Mugabe, D., Smitchger, J.A., Zhang, C., Amin, M. and Rasheed, N., 2020. Dissecting the genetic architecture of Aphanomyces root rot resistance in lentil by QTL mapping and genome-wide association study. International journal of molecular sciences, 21(6), p.2129. https://doi.org/10.3390/ijms21062129

Spoor, S., Wytko, C., Soto, B., Chen, M., Almsaeed, A., Condon, B., Herndon, N., Hough, H., Jung, S., Staton, M. and Wegrzyn, J., 2020. Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. Database, baaa032, 2020. https://doi.org/10.1093/database/baaa032

Crocker, E., Condon, B., Almsaeed, A., Jarret, B., Nelson, C.D., Abbott, A.G., Main, D. and Staton, M., 2020. TreeSnap: A citizen science app connecting tree enthusiasts and forest scientists. Plants, People, Planet, 2(1), pp.47-52. https://doi.org/10.1002/ppp3.41

Kreplak, J., Madoui, M.A., Cápal, P., Novák, P., Labadie, K., Aubert, G., Bayer, P.E., Gali, K.K., Syme, R.A., Main, D. and Klein, A., 2019. A reference genome for pea provides insight into legume genome evolution. Nature Genetics, 51(9), pp.1411-1422. https://doi.org/10.1038/s41588-019-0480-1

Guignon, V., Cannon, E.K., Main, D., Poelchau, M., Ruiz, M., Sanderson, L.A., Staton, M., Wegrzyn, J. and Ficklin, S., 2020. Joining the Tripal community to efficiently expose your research. SFBI. https://jobim2020.sciencesconf.org/resource/page/id/23

Humann, J.L., Lee, T., Ficklin, S.P., Cheng, C.H., Hough, H., Jung, S., Wegrzyn, J., Neale, D. and Main, D., 2020, September. Structural and Functional Genome Annotation Using Web-Based Gensas v6. 0. In HORTSCIENCE (Vol. 55, No. 9, pp. S18-S18). 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA: AMER SOC HORTICULTURAL SCIENCE.

Staton, M.E., Almsaeed, A., Condon, B., Chen, M., Wegrzyn, Jill L.; Main, Doreen; Ficklin, Stephen P.; Abbott, Albert G.; Nelson, C. Dana; Carlson, John E. 2020. Searching, downloading, and analyzing tree genetic and genomic data with the hardwood genomics website. In: Nelson, C. Dana; Koch, Jennifer L.; Sniezko, Richard A., eds. Proceedings of the Sixth International Workshop on the Genetics of Host-Parasite Interactions in Forestry—Tree Resistance to Insects and Diseases: Putting Promise into Practice. Gen. Tech. Rep. SRS–252. Asheville, NC: U.S. Department of Agriculture Forest Service, Southern Research Station

Jung, S., Lee, T., Cheng, C.H., Gasic, K., Humann, J.L., Yu, J., Hough, H., B.T. Campbell, Main, D. 2022. New Features on the Tripal BIMS, Breeding Information Management System. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022 (virtual).

Ficklin, S.P., Wytko, C., Soto, B., Main, D., Feltus, F.A. 2022. Two New Tripal Extension Modules: File Management for FAIR Data and Biological Networks. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022 (virtual).

Honaas, L.A., Zhang, H., Wafula, E.K., Eilers, J., Harkess, A., Timilsena, P., dePamphiis, C.W. Waite, J., Jung, S., Main, D. 2022. Towards a Catalog of Pome Tree Architecture Genes: The Draft ‘d’Anjou’ Genome (Pyrus communis L.). Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022 (virtual).

Humann, J.L., Cheng, C-H., Crabb, J., Jung, S., Yu, J., Main, D. 2022. Using the Tripal Pub Curator Module to Manage Data Curation from Publications. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022 (virtual).

Ru, S., Hardner, C., Evans, K., Main, D., Carter, P.A., Harshman, J., Sandefur, P., Edge-Garza, D. and Peace, C. 2022. Empirical Evaluation of Multi-Trait DNA Testing in an Apple Seedling Population. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022 (virtual).

Yu, J., Jung, S., Cheng, C.H., Lee, T., Humann, J. Zheng, P., Crabb, J., Hough, H., Campbell, B.T., Udall, J., Jones, D., Main, D. 2021. CottonGen: A Central Data Repository and Analysis Resource for the Cotton Community. Proceedings of the National Cotton Council Beltwide Cotton Conference, January 5-7, 2021 (virtual).

Ramnath, R., Sanderson, L-A., Buehler, S., Burns, J., Buble, K., Senalik, D., Richter, P., Caron, C., Almsaeed, A., Condon, B., Staton, M., Main, D., Bett, K., Wegrzyn J.L., and Ficklin, S.P. 2021. Tripal Creates Online Biological, Community Based Web Portals for Research and Analysis. Proceedings of the 2021 Bioinformatics Open-Source Conference, July 29-30, 2021 (virtual).

Updates to the Breeding Information Management System (BIMS). 2021. Jung, S., Lee, T., Cheng, C.H., Gasic, K., Humann, J.L., Yu, J., Hough, H., Main, D. Proceedings of the American Society of Horticultural Science Annual Meeting, August 5-9, 2021, Denver, CO, USA.

Gasic, K., Jung, S., Lee, T., Cheng, C.H., Humann, J.L., Yu, J., Hough, H., Main, D. Specialty Crop Breeding Data Management. Proceedings of the National Association of Plant Breeders Annual Meeting Conference, August 15-19, 2021 (Virtual).

Main, D., Humann, J.L., Cheng, C-H., Lee, T., Zheng, P., Crabb, J., Hough, H., Jung, S., Iorizzo, M. 2021. GDV Webinar - Introduction and Overview. August 19, 2021.

Humann, J.L., Cheng, C-H., Lee, T., Zheng, P., Crabb, J., Hough, H., Jung, S., Iorizzo, M., Main, D. 2021. GDV Webinar - Genetics Data and Tools. August 19, 2021.

Jung, S., Humann, J.L., Lee, T., Hough, H., Gasic, K., Campbell, B.T., Main, D. 2021. GDV Webinar - Breeding Data and Tools. August 19, 2021

Humann, J.L., Cheng, C-H., Lee, T., Zheng, P., Crabb, J., Hough, H., Jung, S., Iorizzo, M., Main, D. 2021. GDV Webinar - Genomics Data and Tools. August 19, 2021.

Humann, J.L., Cheng, C-H., Lee, T., Zheng, P., Crabb, J., Hough, H., Jung, S., Iorizzo, M., Main, D. 2021. GDV Workshop - Using the GDV Breeding Information Management System. 2021. Proceedings of the XII International Vaccinium Symposium - August. 30- September 1, 2021 (Virtual).

Main, D., Jung, S., Lee, T., Humann, J.L., Cheng, C-H., Zheng, P., Crabb, J., Hough, H., Jung, S., Iorizzo, M., 2021. GDV Workshop - Using GDV for Genetics, Genomics, and Breeding Research. 2021. Proceedings of the XII International Vaccinium Symposium - August 30 - September 1, 2021 (Virtual).

Humann J, Crabb J, Cheng C-H, Lee T, Zheng P, Buble K, Jung S, Yu J, Hough H. Coyne C, McGee R, Main D. 2021. The Pulse Crop Database: A Resource for Pulse Crop Research and Improvement. Proceedings of the 2021 Biennial NAPIA and BIC Bean Meeting, November 4-6, 2021 (Virtual).

Yu, J., Jung, S., Cheng, C.H., Lee, T., Humann, J. Zheng, P., McGaughey, D., Frank, M., Scott, K., Hough, H., Campbell, B.T., Mohan, A., Udall, J., Percy, R.G., Jones, D., Main, D. 2020. How can CottonGen Help in Crop Improvement. Proceedings of the National Cotton Council Beltwide Cotton Conference, January 9-11, 2020, Austin, Texas, USA.

Yu, J., Jung, S., Cheng, C.H., Lee, T., Humann, J. Zheng, P., Crabb, J., Hough, H., Campbell, B.T., Udall, J., Jones, D., Main, D. 2020. CottonGen, a Central Platform to Facilitate Knowledge Discovery in Cotton Research. Proceedings of the National Cotton Council Beltwide Cotton Conference, January 9-11, 2020, Austin, Texas, USA.

Jung, S., Lee, T., Cheng, C.H., Zheng, P., Buble, K., Humann, J.L., Yu, J., Hough, H., Crabb, J. and Main, D. 2020. Resources for Strawberry Genomics, Genetics and Breeding Research in GDR, Genome Database for Rosaceae. Proceedings of the Plant and Animal Genome XXVIII Conference, January 11-15, 2020.

Staton, M.E., West, J., Richards, C., Sisler, P., Senu, R., Phillips, C., Huff, M., Almsaeed, A., Wegrzyn, J.L., Main, D. and Ficklin, S.P., 2020. RNAseq Data in Tripal-Two Steps Forward, One Step Back. Proceedings of the Plant and Animal Genome XXVIII Conference, January 11-15, 2020.

Herndon, N., Santos, R., Ramnath, R., Richter, P., Buehler, S.T., Grau, E., Wegrzyn, J.L., Main, D., Ficklin, S.P. and Staton, M., 2020. Tapping into the Tripal Galaxy: Association Mapping Studies on Forest Trees with CartograTree. Proceedings of the Plant and Animal Genome XXVIII Conference, January 11-15, 2020.

Ficklin, S.P., Sanderson, L.A., Condon, B., Spoor, S., Cheng, C.H., Almsaeed, A., Chen, M., Bretaudeau, A., Rasche, H., Main, D. and Wegrzyn, J.L. 2020. Tripal, an Open-Source Toolkit for Construction of Online, Searchable, Extendable and FAIR Biological Databases. Proceedings of the Plant and Animal Genome XXVIII Conference, January 11-15, 2020.

Jung, S., Cheng, C.H., Humann, J.L., Yu, J., Lee, T., Hough, H. and Main, D. 2020. Tripal MegaSearch: An Interactive and Customizable Tool for Query and Download of Big Data from Tripal Databases. Proceedings of the Plant and Animal Genome XXVIII Conference, January 11-15, 2020.

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. Breeding Information Management System (BIMS) for Fruit Breeding. Proceedings of the American Society of Horticultural Science Annual Meeting, August 10-13, 2020 (virtual).

Humann, J.L., Lee, T., Cheng, C-H., Ficklin, S.P. Wegrzyn, J.L., Neale, S., Main, D. 2020. Structural and Functional Genome Annotation Using Web-Based Gensas v6.0. Proceedings of the American Society of Horticultural Science Annual Meeting, August 10-13, 2020 (virtual).

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. GDR: New Data, New Functionality, and New Opportunities. Proceedings of the 10th International Rosaceae Genomics Conference, Dec 9-11, 16-18, 2020 (Virtual)

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. GDR Workshop - How to use BIMS (Breeding Information Management System). Proceedings of the 10th International Rosaceae Genomics Conference, Dec 9-11, 16-18, 2020 (Virtual)

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. GDR Workshop - How to use MegaSearch. Proceedings of the 10th International Rosaceae Genomics Conference, Dec 9-11, 16-18, 2020 (Virtual)

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. GDR Workshop - How to use MapViewer. Proceedings of the 10th International Rosaceae Genomics Conference, Dec 9-11, 16-18, 2020 (Virtual)

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. GDR Workshop - How to use Synteny Viewer. Proceedings of the 10th International Rosaceae Genomics Conference, Dec 9-11, 16-18, 2020 (Virtual)

Jung, S., Lee, T., Cheng, C-H., Buble, K., Zheng, P., Crabb, J., Yu, J., Humann, J.L., Hough, H., Main D. 2020. GDR Workshop - How to use PathwayCyc. Proceedings of the 10th International Rosaceae Genomics Conference, Dec 9-11, 16-18, 2020 (Virtual)

Coyne, C.J., Mugabe, D., Zheng, P., Smitchger, J., Ma, Y., Main, D. and McGee, R.J. (2019). Pea Seed Protein Concentration: GWAS Approach Utilizing Pea Core Plus Collection. Proceedings of the ASA, CSSA and SSSA International Annual Meetings, November 10-13, 2019; San Antonio, TX, USA.

Humann J, Crabb J, Cheng C-H, Lee T, Zheng P, Buble K, Jung S, Yu J, Frank M, McGaughey D, Scott K, Sanad M, Hough H. Coyne C, McGee R, Main D .2019. The Pulse Crop Database: Expanding the Cool Season Food Legume Database into a Resource for Pulse Crop Research and Improvement. Proceedings of the 2019 NAPIA Biennial Meeting: November 2019, Fargo, ND, USA

Humann J, Crabb J, Cheng C-H, Lee T, Zheng P, Buble K, Jung S, Yu J, Frank M, McGaughey, D., Scott K, Sanad M, Hough H. Coyne C, McGee R, Main D. 2019. The Pulse Crop Database: Expanding the Cool Season Food Legume Database into a Resource for Pulse Crop Research and Improvement. Proceedings of the 2019 Biennial Bean Improvement Cooperative Meeting: November 2019, Fargo, ND, USA.

Main, D., Jung, S. Lee, T., Cheng, C-H., Humann, J.L., Yu, J., Zheng, P., Buble, K., Hough, H., Devetter, L., Peace, C., McFerson, J., Iorrizo, M. (2019). Database Resources for Small Fruit Research and Breeding. Abstracts of WA Small Fruit Conference, December 4-6, 2019, Lynden, WA, USA

01/15/2023

Yu, J., Jung, S., Cheng, C.H., Lee, T., Zheng, P., Buble, K., Crabb, J., Humann, J., Hough, H., Jones, D. and Campbell, J.T., 2021. CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research. Plants, 10(12), p.2805. https://doi.org/10.3390/plants10122805

Jung, S., Lee, T., Cheng, C. H., Zheng, P., Bubble, K., Crabb, J., ... & Main, D. (2022, May). Resources for peach genomics, genetics and breeding research in GDR, the Genome Database for Rosaceae. In X International Peach Symposium 1352 (pp. 149-156). 10.17660/ActaHortic.2022.1352.20

Edger, P. P., Iorizzo, M., Bassil, N. V., Benevenuto, J., Ferrão, L. F. V., Giongo, L., ... & Zalapa, J. (2022). There and back again; historical perspective and future directions for Vaccinium breeding and research studies. Horticulture Research, 9, uhac083. https://doi.org/10.1093/hr/uhac083

Rolling, W. R., Senalik, D., Iorizzo, M., Ellison, S., Van Deynze, A., & Simon, P. W. (2022). CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota). Database, baac079. https://doi.org/10.1093/database/baac079

Thavarajah, D., Lawrence, T. J., Powers, S. E., Kay, J., Thavarajah, P., Shipe, E., ... & Boyles, R. (2022). Organic dry pea (Pisum sativum L.) biofortification for better human health. PloS one, 17(1), e0261109. https://doi.org/10.1371/journal.pone.0261109.

Salaria, S., Boatwright, J. L., Thavarajah, P., Kumar, S., & Thavarajah, D. (2022). Protein Biofortification in Lentils (Lens culinaris Medik.) Toward Human Health. Frontiers in Plant Science, 934. https://doi.org/10.3389/fpls.2022.869713

Madurapperumage, A., Johnson, N., Thavarajah, P., Tang, L., & Thavarajah, D. (2022). Fourier‐transform infrared spectroscopy (FTIR) as a high‐throughput phenotyping tool for quantifying protein quality in pulse crops. The Plant Phenome Journal, 5(1), e20047. https://doi.org/10.1002/ppj2.20047

Reda, T., & Powers, S. E. (2022). Falling into line: Adaptation of organically grown kale (Brassica oleracea var. acephala) and kale relatives to fall planting. Scientia Horticulturae, 295, 110878. https://doi.org/10.1016/j.scienta.2022.110878

Humann J, Crabb J, Cheng C-H, Lee T, Zheng P, Buble K, Jung S, Yu J, Hough H, Coyne C, McGee R, Main D. 2021. The Pulse Crop Database: A Resource for Pulse Crop Research and Improvement. Proceedings of the 2021 Biennial NAPIA and BIC Bean Meeting, November 4-6, 2021.

Jung S, Lee T, Cheng C-H, Gasic K, Humann JL, Yu J, Hough H, B.T. Campbell, Main, D. 2022. New Features on the Tripal BIMS, Breeding Information Management System. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022.

Ficklin, SP, Wytko C, Soto B, Main D, Feltus FA. 2022. Two New Tripal Extension Modules: File Management for FAIR Data and Biological Networks. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022.

Honaas, LA, Zhang H, Wafula EK, Eilers J, Harkess A, Timilsena P, dePamphiis CW, Waite J, Jung S, Main D. 2022. Towards a Catalog of Pome Tree Architecture Genes: The Draft ‘d’Anjou’ Genome (Pyrus communis L.). Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022.

Humann JL, Cheng C-H, Crabb J, Jung S, Yu J, Main D. 2022. Using the Tripal Pub Curator Module to Manage Data Curation from Publications. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022.

Ru S, Hardner C, Evans K, Main, D, Carter PA, Harshman J, Sandefur P, Edge-Garza D. and Peace C. 2022. Empirical Evaluation of Multi-Trait DNA Testing in an Apple Seedling Population. Proceedings of the Plant and Animal Genome XXIX Conference, January 8-12, 2022.

Iorizzo M, Molla MF, Bostan H, De Paola D, Teresi S, Teresi A, Cremona G, Qi X, Mackey T, Bassil N, Ashrafi H, Giongo L, Jibran R, Chagne D, Bianco L, Lila MA, Rowland LJ, Iovene M and Edger P. 2022. Comparative genome analysis in blueberry revealed autopolyploid recombination behavior and a heterozygous reciprocal translocation. American Society for Horticultural Science 2022 Annual Conference, July 29-August 3, 2022, Chicago, IL, USA.

Iorizzo M, Lila MA, Perkins-Veazie P, Pottorff M, Mengist MF, Colonna A, Vorsa N, Edger P, Bassil N, Luby C, Mackey T, Munoz P, Zalapa J, Gallardo KR, Atucha A, Main D, Giongo L, Li C, Polashock J, Sims C, Canales E, DeVetter L, Chagne D, Espley R and Coe M. 2022. Vaccinium CAP: A community-based project to develop advanced genetic and genomic tools to improve fruit quality in blueberry and cranberry. Acta Horticulturae, Proceeding of the International Symposium on Breeding and Effective Use of Biotechnology and Molecular Tools in Horticultural Crops, August 14-20, 2022, Angers, France.

Mengist MF, Grace M, Mackey T, Bassil N, Luby C, Ferruzzi M, Lila MA and Iorizzo M. Dissecting the genetic basis of anthocyanins accumulation and diversity in blueberries (Vaccinium corymbosum L). American Society for Horticultural Science 2022 Annual Conference, July 29-August 3, 2022, Chicago, IL, USA.

Humann J, Crabb J, Frank M, C-H Cheng, P Zheng, T Lee, K Buble, H Hough, K Scott, S Jung, D Main. Using the Citrus Genome Database for Genetics, Genomics, and Breeding Research. American Society for Horticultural Science 2022 Annual Meeting, July 30-August 3, 2022, Chicago, IL.

Jung S., J. Yu, J. Humann, P. Zheng, T. Lee, C-H. Cheng, K. Buble, H. Hough, D. Main. Database and Data Management Resources for Tree Fruit and Berry Breeding. American Society for Horticultural Science 2022 Annual Meeting, July 30-August 3, 2022, Chicago, IL.

Jung, J. Humann, J. Yu, P. Zheng, T. Lee, C-H. Cheng, K. Buble, H. Hough, D. Main. Complementary Efforts By Other Databases, Initiatives and Networks to Facilitate Use of the Existing Genetic Diversity in the NPGS System and Other Collections (GDV, GDR, AgBioData). American Society for Horticultural Science 2022 Annual Meeting, July 30-August 3, 2022, Chicago, IL.

Jung, J. Yu, J. Humann, P. Zheng, T. Lee, C-H. Cheng, K. Buble, H. Hough, and D. Main 2022. Update on database resources for tree fruit, berry, cotton, and pulse genome research. Plant Biology 2022 (organized by ASPB), July 11, 2022, Portland, OR

Jung, T. Lee, C-H. Cheng, P. Zheng, K. Buble, J. Crabb, K. Gasic, J. Yu, J. Humann, H. Hough, and D. Main 2022. Resources for peach genomics, genetics and breeding research in GDR, the Genome Database for Rosaceae. Proceedings of the 10th ISHS Peach Symposium, May 30-June 3, 2022, Naoussa, Greece.